RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RPL27AP46776 148 aaKnown RBP14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 ZNF45Q02386 682 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 CATR1Q13166 79 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 EXOSC2Q13868 293 aaKnown RBP14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 SGPP2Q8IWX5 399 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 VKORC1L1Q8N0U8 176 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 SLC5A7Q9GZV3 580 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 ZMAT4Q9H898 229 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 CCL28Q9NRJ3 127 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 SLC2A9Q9NRM0 540 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 DPPA5A6NC42 116 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 C3orf84H3BNL1 204 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 ZNF735P0CB33 412 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 RPL8P62917 257 aaKnown RBP14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 DEFA5Q01523 94 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 UBE2NLQ5JXB2 153 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 C10orf55Q5SWW7 151 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 LCN12Q6JVE5 192 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 Q8N1Y9 231 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 Q8N402 240 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 OR2K2Q8NGT1 345 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 CD300LFQ8TDQ1 290 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 KCTD12Q96CX2 325 aaKnown RBP14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 BET1LQ9NYM9 111 aa14.54□□□□□ -0.08
CCDC28A-203ENST00000617445 TEX22C9J3V5 150 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 PRH1P02810 166 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 CSN3P07498 182 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 IL6RP08887 468 aaPredicted RBP14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 FGF2P09038 288 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 C15orf32Q32M92 178 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 HAPLN4Q86UW8 402 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 SPAG16Q8N0X2 631 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 YIPF6Q96EC8 236 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 RCHY1Q96PM5 261 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 IFT46Q9NQC8 304 aa14.53□□□□□ -0.08
CCDC28A-203ENST00000617445 HMX3A6NHT5 357 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 BMPR1BO00238 502 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 HPRT1P00492 218 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 CRYGCP07315 174 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 IGHV4-30-4P0DP06 118 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 PTHLHP12272 177 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 HIST1H1BP16401 226 aaKnown RBP14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 HLA-GP17693 338 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 RPS19P39019 145 aaKnown RBP14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 TAS2R31P59538 309 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 KLK9Q2XQG4 91 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 DHRS11Q6UWP2 260 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 FYTTD1Q96QD9 318 aaKnown RBP14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 C19orf73Q9NVV2 129 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 KLK9Q9UKQ9 250 aa14.52□□□□□ -0.09
CCDC28A-203ENST00000617445 TNFSF12O43508 249 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 OR2J3O76001 311 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 NQO2P16083 231 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 PSMB6P28072 239 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 MECP2P51608 486 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 FXYD4P59646 89 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 HERV-K104P61576 105 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 POU2AF1Q16633 256 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 TMEM69Q5SWH9 247 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 SSX9Q7RTT3 188 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 GTSCR1Q86UQ5 136 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 FBXL7Q9UJT9 491 aa14.51□□□□□ -0.09
CCDC28A-203ENST00000617445 GGCTO75223 188 aaKnown RBP14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 TAS2R46P59540 309 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 OR4A47Q6IF82 309 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 SAMD12Q8N8I0 201 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 GPHA2Q96T91 129 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 SRSF8Q9BRL6 282 aaKnown RBP14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 PLEKHA2Q9HB19 425 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 HRASLSQ9HDD0 168 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 ADAM30Q9UKF2 790 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 ANAPC10Q9UM13 185 aa14.5□□□□□ -0.09
CCDC28A-203ENST00000617445 E7EUB6 86 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 SULT1C2O00338 296 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 CTRB1P17538 263 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 NAT1P18440 290 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 CTRB2Q6GPI1 263 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 ZNF818PQ6ZRF7 136 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 LAX1Q8IWV1 398 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 CMTM3Q96MX0 182 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 FANCD2OSQ96PS1 177 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 TM2D3Q9BRN9 247 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 EHFQ9NZC4 300 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 COMMD9Q9P000 198 aa14.49□□□□□ -0.09
CCDC28A-203ENST00000617445 A0A1B0GW64 132 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 LGALS9O00182 355 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 DEFA4P12838 97 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 GNRHRP30968 328 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 PRSS3P35030 304 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 TAS2R20P59543 309 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 AADACL3Q5VUY0 350 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 THOC7Q6I9Y2 204 aaKnown RBP14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 TMEM17Q86X19 198 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 GPHB5Q86YW7 130 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 SLC25A46Q96AG3 418 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 EEF1AKMT3Q96AZ1 226 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 THAP7Q9BT49 309 aaPredicted RBP14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 COMMD5Q9GZQ3 224 aa14.48□□□□□ -0.09
CCDC28A-203ENST00000617445 KMT2CQ8NEZ4 4911 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 TRBV7-1A0A0A6YYK4 115 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms