RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GNB4Q9HAV0 340 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.23□□□□□ -1.57
VPS53-213ENST00000572334 MBNL3Q9NUK0 354 aaKnown RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 FAM90A10PA6NDY2 464 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 C5orf52A6NGY3 159 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 G3V318 75 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 GABARAPH6UMI1 98 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 RAMP3O60896 148 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 IGLV1-40P01703 118 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 SNRPBP14678 240 aaKnown RBP5.22□□□□□ -1.57
VPS53-213ENST00000572334 FSTP19883 344 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 GNB1P62873 340 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 COTL1Q14019 142 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 GNMTQ14749 295 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 SLC22A6Q4U2R8 563 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 MORN2Q502X0 79 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 CXorf66Q5JRM2 361 aaPredicted RBP5.22□□□□□ -1.57
VPS53-213ENST00000572334 UBE2NLQ5JXB2 153 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 C9orf66Q5T8R8 295 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 AWAT2Q6E213 333 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 ZNF491Q8N8L2 437 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 INO80EQ8NBZ0 244 aaPredicted RBP5.22□□□□□ -1.57
VPS53-213ENST00000572334 OR11H4Q8NGC9 324 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 OR10V1Q8NGI7 309 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 OR8U1Q8NH10 309 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 OR4K15Q8NH41 348 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 SMIM4Q8WVI0 70 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 C4orf3Q8WVX3 66 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 FCAMRQ8WWV6 532 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 CPNE2Q96FN4 548 aaPredicted RBP5.22□□□□□ -1.57
VPS53-213ENST00000572334 ASCL2Q99929 193 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 TPSG1Q9NRR2 321 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 ZNF107Q9UII5 783 aaPredicted RBP5.22□□□□□ -1.57
VPS53-213ENST00000572334 FBXO7Q9Y3I1 522 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 U3KQK5 164 aa5.22□□□□□ -1.57
VPS53-213ENST00000572334 ELOA3CA0A087WX78 387 aaPredicted RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 IGHV7-81A0A0B4J1V7 117 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 TRAV1-2A0A0B4J238 106 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 A0A1W2PPK0 400 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 SEC14L6B5MCN3 397 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 LANCL1O43813 399 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 SOX15O60248 233 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 CFDP00746 253 aaPredicted RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 CSTBP04080 98 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 NHLRC4P0CG21 123 aaPredicted RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 TPT1P13693 172 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 GTF2F2P13984 249 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 ELK1P19419 428 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 ECI1P42126 302 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 PKIAP61925 76 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 CYCSP99999 105 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 NDPQ00604 133 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 RUNX1Q01196 453 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 RBMS2Q15434 407 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 Q499Y3 187 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 ANKRD39Q53RE8 183 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 C10orf91Q5T1B1 145 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 RAB12Q6IQ22 244 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 GLIPR1L1Q6UWM5 242 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 ALKAL2Q6UX46 152 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 UNQ9370/PRO34162Q6UXP9 181 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 MRPL52Q86TS9 123 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 SAMD12Q8N8I0 201 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 OR11H1Q8NG94 326 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 OR52L2PQ8NGH6 319 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 OR5M8Q8NGP6 311 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 TERB2Q8NHR7 220 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 MRPL30Q8TCC3 161 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 SAT2Q96F10 170 aaPredicted RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 CXorf58Q96LI9 332 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 Q96M66 194 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 OR14A2Q96R54 314 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 RASL11BQ9BPW5 248 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 NABP2Q9BQ15 211 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 MRPL20Q9BYC9 149 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 TOLLIPQ9H0E2 274 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 BANF2Q9H503 90 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 TAF9BQ9HBM6 251 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 MRPS28Q9Y2Q9 187 aaKnown RBP5.21□□□□□ -1.58
VPS53-213ENST00000572334 WSB1Q9Y6I7 421 aa5.21□□□□□ -1.58
VPS53-213ENST00000572334 FXYD6-FXYD2A0A087WZ82 144 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 LOC100996750A0A140TA64 210 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 FAM90A7PA6NKC0 464 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 FAM90A23PA8MXZ1 464 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 ATP6V0E1O15342 81 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 ARPC5O15511 151 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 TXNL1O43396 289 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 BCL2L11O43521 198 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 NDUFA3O95167 84 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 HLA-DRB1P01911 266 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 CD1AP06126 327 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 SPP1P10451 314 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 CD37P11049 281 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 EGR2P11161 476 aaPredicted RBP5.2□□□□□ -1.58
VPS53-213ENST00000572334 SLC25A4P12235 298 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 CXCL3P19876 107 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 IL3RAP26951 378 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 CHATP28329 748 aa5.2□□□□□ -1.58
VPS53-213ENST00000572334 PPP1CCP36873 323 aaKnown RBP5.2□□□□□ -1.58
VPS53-213ENST00000572334 CRIP2P52943 208 aaPredicted RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms