RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FAM3BP58499 235 aaPredicted RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 VMA21Q3ZAQ7 101 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 MEGF10Q96KG7 1140 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 GPR61Q9BZJ8 451 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 TCF19Q9Y242 345 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 OR51B2Q9Y5P1 312 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 FOXI3A8MTJ6 420 aaPredicted RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 KIAA1324LA8MWY0 1029 aaPredicted RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 TM4SF5O14894 197 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 GLRXP35754 106 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 CLDND2Q8NHS1 167 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 FAM216AQ8WUB2 273 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 PSMG3Q9BT73 122 aaPredicted RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 TMEM50AO95807 157 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 OR10J4P0C629 311 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 SELLP14151 372 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 TCL1AP56279 114 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 LGALS4P56470 323 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 RPL30P62888 115 aaKnown RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 ICAM4Q14773 271 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 PEAR1Q5VY43 1037 aaPredicted RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 FAM53AQ6NSI3 398 aaPredicted RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 TCTEX1D1Q8N7M0 179 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 CMTM2Q8TAZ6 248 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 TPPP3Q9BW30 176 aa9.75□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF331Q9NQX6 463 aaPredicted RBP9.75□□□□□ -0.85
NPHP4-204ENST00000460696 IFNL4K9M1U5 179 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 IGHV3-48P01763 117 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 ORM2P19652 201 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 NTF3P20783 257 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PMS2P11Q13670 270 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 RTP5Q14D33 572 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PCSK4Q6UW60 755 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 FAM216BQ8N7L0 139 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 LURAP1Q96LR2 239 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PARLQ9H300 379 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF355PQ9NSJ1 428 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 JPT1Q9UK76 154 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 SLC45A2Q9UMX9 530 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 COLCA2A8K830 154 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 K7EM74 188 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 K7ENP7 123 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 CT45A6P0DMU7 189 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 CT45A5P0DMU8 189 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 CT45A7P0DMV0 189 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF146Q15072 292 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 CT45A1Q5HYN5 189 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 Q6P435 159 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 CT45A3Q8NHU0 189 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 FLYWCH2Q96CP2 140 aaKnown RBP9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PCGF1Q9BSM1 259 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 FAM103A1Q9BTL3 118 aaKnown RBP9.74□□□□□ -0.85
NPHP4-204ENST00000460696 CTDSP1Q9GZU7 261 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 TUBG2Q9NRH3 451 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 CISD1Q9NZ45 108 aaKnown RBP9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PRNDQ9UKY0 176 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PPIAL4EA0A075B759 164 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PPIAL4DF5H284 164 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 OR4A8P0C604 315 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PPIAL4FP0DN26 164 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 GNG4P50150 75 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 IL15RAQ13261 267 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 TIMM23BQ5SRD1 257 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 TGIF2LYQ8IUE0 185 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 TGIF2LXQ8IUE1 241 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 OR10G8Q8NGN5 311 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF835Q9Y2P0 537 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 PPIAL4AQ9Y536 164 aa9.74□□□□□ -0.85
NPHP4-204ENST00000460696 IGHV3-21A0A0B4J1V1 117 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 IGHV1-18A0A0C4DH31 117 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 A0A1W2PNU3 283 aaPredicted RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 C1orf174Q8IYL3 243 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 SGMS2Q8NHU3 365 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 BLNKQ8WV28 456 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 FKBP11Q9NYL4 201 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 MED12LQ86YW9 2145 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 CEP192Q8TEP8 1941 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 UBE2L3P68036 154 aaKnown RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 NPCDR1Q9BY65 106 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 MLNRO43193 412 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 BPIFB3P59826 476 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 C1orf162Q8NEQ5 155 aaPredicted RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 RPEQ96AT9 228 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 TIMD4Q96H15 378 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 PACRGQ96M98 296 aaPredicted RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 UBTD1Q9HAC8 227 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 OR10J1P30954 320 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 HSPE1P61604 102 aaKnown RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 SUMO1P63165 101 aaKnown RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 HABP2Q14520 560 aaPredicted RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 TNXAQ16473 311 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 ZNF705AQ6ZN79 300 aaPredicted RBP9.73□□□□□ -0.85
NPHP4-204ENST00000460696 P2RX4Q99571 388 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 ONECUT1Q9UBC0 465 aa9.73□□□□□ -0.85
NPHP4-204ENST00000460696 LRP4O75096 1905 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 CXorf1O96002 111 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 LINC01560Q8TB33 94 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 NAT8BQ9UHF3 227 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 DOPEY1Q5JWR5 2465 aa9.72□□□□□ -0.85
NPHP4-204ENST00000460696 FCN1O00602 326 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms