RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 RNF152Q8N8N0 203 aa11.78□□□□□ -0.52
UPF1-202ENST00000594243 POC5Q8NA72 575 aa11.78□□□□□ -0.52
UPF1-202ENST00000594243 MINDY2Q8NBR6 621 aa11.78□□□□□ -0.52
UPF1-202ENST00000594243 VSTM2AQ8TAG5 236 aa11.78□□□□□ -0.52
UPF1-202ENST00000594243 CD300LFQ8TDQ1 290 aa11.78□□□□□ -0.52
UPF1-202ENST00000594243 ARPC1AQ92747 370 aa11.78□□□□□ -0.52
UPF1-202ENST00000594243 TPSG1Q9NRR2 321 aa11.78□□□□□ -0.52
UPF1-202ENST00000594243 M0QYG6 137 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 GPR31O00270 319 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 RBFOX2O43251 390 aaKnown RBP eCLIP11.77□□□□□ -0.53
UPF1-202ENST00000594243 HPRT1P00492 218 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 HRASP01112 189 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 EGR2P11161 476 aaPredicted RBP11.77□□□□□ -0.53
UPF1-202ENST00000594243 PSMB8P28062 276 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 CD40LGP29965 261 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 CDX1P47902 265 aaPredicted RBP11.77□□□□□ -0.53
UPF1-202ENST00000594243 UCP3P55916 312 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 BRWD1-AS2P59051 145 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 GNB1P62873 340 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 DGCR2P98153 550 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 NDPQ00604 133 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 ECSCRQ19T08 205 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 AADACL3Q5VUY0 350 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 SMIM4Q8WVI0 70 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 DGCR14Q96DF8 476 aaKnown RBP11.77□□□□□ -0.53
UPF1-202ENST00000594243 TMEM68Q96MH6 324 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 GPHA2Q96T91 129 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 FBXO7Q9Y3I1 522 aa11.77□□□□□ -0.53
UPF1-202ENST00000594243 A0A1W2PN81 502 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 NUDT19A8MXV4 375 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 ARPC1BO15143 372 aaKnown RBP11.76□□□□□ -0.53
UPF1-202ENST00000594243 PGLYRP1O75594 196 aaPredicted RBP11.76□□□□□ -0.53
UPF1-202ENST00000594243 IGLV1-40P01703 118 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 RPLP1P05386 114 aaKnown RBP11.76□□□□□ -0.53
UPF1-202ENST00000594243 CHRNA7P36544 502 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 PJVKQ0ZLH3 352 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 PRSS8Q16651 343 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 STEAP1BQ6NZ63 245 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 UNQ5815/PRO19632Q6UWF5 114 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 ZNF695Q8IW36 515 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 SLC38A6Q8IZM9 456 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 LFNGQ8NES3 379 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 OR5M8Q8NGP6 311 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 SOSTQ9BQB4 213 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 FAM103A1Q9BTL3 118 aaKnown RBP11.76□□□□□ -0.53
UPF1-202ENST00000594243 RSRP1Q9BUV0 290 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 TINAGL1Q9GZM7 467 aaPredicted RBP11.76□□□□□ -0.53
UPF1-202ENST00000594243 FXYD6Q9H0Q3 95 aa11.76□□□□□ -0.53
UPF1-202ENST00000594243 FOXA2Q9Y261 457 aaPredicted RBP11.76□□□□□ -0.53
UPF1-202ENST00000594243 TRRAPQ9Y4A5 3859 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 GSTZ1O43708 216 aaPredicted RBP11.75□□□□□ -0.53
UPF1-202ENST00000594243 RAMP3O60896 148 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 ACTL6BO94805 426 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 OR2A4O95047 310 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 RAB3DO95716 219 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 PF4P02776 101 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 CD74P04233 296 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 SAA1P0DJI8 122 aaPredicted RBP11.75□□□□□ -0.53
UPF1-202ENST00000594243 RAB9AP51151 201 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 TAS2R31P59538 309 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 MEF2DQ14814 521 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 TNXAQ16473 311 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 C19orf54Q5BKX5 351 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 IDO2Q6ZQW0 420 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 MMD2Q8IY49 270 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 KLHL30-AS1Q8NEE0 82 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 OR51H1Q8NH63 302 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 GRPEL2Q8TAA5 225 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 RHOVQ96L33 236 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 OR2A7Q96R45 310 aa11.75□□□□□ -0.53
UPF1-202ENST00000594243 MEGF8Q7Z7M0 2845 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 RLN1P04808 185 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 F2RP25116 425 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 MRGPRG-AS1Q2M3A8 158 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 VKORC1L1Q8N0U8 176 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 TERB2Q8NHR7 220 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 UBE2E2Q96LR5 201 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 PHB2Q99623 299 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 ZNF430Q9H8G1 570 aaPredicted RBP11.74□□□□□ -0.53
UPF1-202ENST00000594243 PLEKHA2Q9HB19 425 aa11.74□□□□□ -0.53
UPF1-202ENST00000594243 MSGN1A6NI15 193 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 DISC1C4P0D8 188 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 KBTBD11O94819 623 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 AKAIN1P0CW23 69 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 NQO2P16083 231 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 PTBP1P26599 531 aaKnown RBP eCLIP11.73□□□□□ -0.53
UPF1-202ENST00000594243 MAS1LP35410 378 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 MYCNOSP40205 109 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 SSBP2P81877 361 aaPredicted RBP11.73□□□□□ -0.53
UPF1-202ENST00000594243 PHLDA2Q53GA4 152 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 LCNL1Q6ZST4 164 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 C8orf86Q6ZUL3 223 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 LHFPL1Q86WI0 220 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 PUSL1Q8N0Z8 303 aaKnown RBP11.73□□□□□ -0.53
UPF1-202ENST00000594243 ZNF491Q8N8L2 437 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 OR4A5Q8NH83 315 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 TMEM167AQ8TBQ9 72 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 ZNF486Q96H40 463 aaPredicted RBP11.73□□□□□ -0.53
UPF1-202ENST00000594243 KLK15Q9H2R5 256 aa11.73□□□□□ -0.53
UPF1-202ENST00000594243 SLA2Q9H6Q3 261 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 136.5 ms