RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 FAM90A9PA6NNJ1 464 aa15.29■□□□□ 0.04
PRPF40B-208ENST00000548436 MDKP21741 143 aaPredicted RBP15.29■□□□□ 0.04
PRPF40B-208ENST00000548436 MAS1LP35410 378 aa15.29■□□□□ 0.04
PRPF40B-208ENST00000548436 HOXA1P49639 335 aaPredicted RBP15.29■□□□□ 0.04
PRPF40B-208ENST00000548436 FAM216BQ8N7L0 139 aa15.29■□□□□ 0.04
PRPF40B-208ENST00000548436 NPCDR1Q9BY65 106 aa15.29■□□□□ 0.04
PRPF40B-208ENST00000548436 SH3BGRL2Q9UJC5 107 aa15.29■□□□□ 0.04
PRPF40B-208ENST00000548436 C16orf97H3BN30 126 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 ITGB1BP1O14713 200 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 HMGB3O15347 200 aaKnown RBP15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 TNFSF4P23510 183 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 AKR1D1P51857 326 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 TMEM108Q6UXF1 575 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 SLC35E3Q7Z769 313 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 WFDC8Q8IUA0 241 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 OR4A16Q8NH70 328 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 LHX4Q969G2 390 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 FAM122AQ96E09 287 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 GAB2Q9UQC2 676 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 A0A087WWC5 75 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 SAA2-SAA4A0A096LPE2 208 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 TRGV10A0A0A0MS01 117 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 DPRXA6NFQ7 191 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 SAA2P0DJI9 122 aaPredicted RBP15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 RAB7AP51149 207 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 RELBQ01201 579 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 FFAR4Q5NUL3 377 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 ADAM5Q6NVV9 412 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 ZNF788Q6ZQV5 615 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 SLC25A22Q9H936 323 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 VAX2Q9UIW0 290 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 SSUH2Q9Y2M2 353 aa15.28■□□□□ 0.04
PRPF40B-208ENST00000548436 PIEZO2Q9H5I5 2752 aa15.27■□□□□ 0.04
PRPF40B-208ENST00000548436 NQO2P16083 231 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 SPCS3P61009 180 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 CCL8P80075 99 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 OR10G9Q8NGN4 311 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 OR10G7Q8NGN6 311 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 SNRNP40Q96DI7 357 aaKnown RBP15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF251Q9BRH9 671 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 TMPRSS5Q9H3S3 457 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 TMEM140Q9NV12 185 aa15.27■□□□□ 0.03
PRPF40B-208ENST00000548436 THBDP07204 575 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 ERVK-16P61578 105 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 SNRPEP62304 92 aaKnown RBP15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 TLE1Q04724 770 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 ZCCHC24Q8N2G6 241 aaKnown RBP15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 MALSU1Q96EH3 234 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 P2RX4Q99571 388 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 ELOVL5Q9NYP7 299 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 MMP23AO75900 390 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 KIR2DS2P43631 304 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 VDAC2P45880 294 aaPredicted RBP15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 PMS2P11Q13670 270 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 ADIPOQQ15848 244 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 GFRALQ6UXV0 394 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 HEPN1Q6WQI6 88 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 Q8N7P7 452 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF439Q8NDP4 499 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 OR52E5Q8NH55 327 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 RAB9BQ9NP90 201 aa15.26■□□□□ 0.03
PRPF40B-208ENST00000548436 CTXND1A0A1B0GTU2 59 aa15.25■□□□□ 0.03
PRPF40B-208ENST00000548436 MBP02144 154 aa15.25■□□□□ 0.03
PRPF40B-208ENST00000548436 BSPH1Q075Z2 132 aa15.25■□□□□ 0.03
PRPF40B-208ENST00000548436 PDLIM3Q53GG5 364 aaPredicted RBP15.25■□□□□ 0.03
PRPF40B-208ENST00000548436 TEX36Q5VZQ5 186 aa15.25■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF343Q6P1L6 599 aa15.25■□□□□ 0.03
PRPF40B-208ENST00000548436 ROS1P08922 2347 aa15.25■□□□□ 0.03
PRPF40B-208ENST00000548436 RRHO14718 337 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 IFNA1P01562 189 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 OR4A8P0C604 315 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 DEFA4P12838 97 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 IRF2P14316 349 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 SPACA3Q8IXA5 215 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 LYG1Q8N1E2 194 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF709Q8N972 641 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF383Q8NA42 475 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 OR4S2Q8NH73 311 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 IDI2-AS1Q9NZ38 188 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 JKAMPQ9P055 326 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 C5orf52A6NGY3 159 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 IFNA10P01566 189 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 CD1BP29016 333 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 GNG10P50151 68 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 CD81P60033 236 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 MRPS11P82912 194 aaKnown RBP15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 FOXC1Q12948 553 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 PRR30Q53SZ7 412 aaPredicted RBP15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 LINC00574Q9H8X3 128 aa15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 HEYLQ9NQ87 328 aaPredicted RBP15.24■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF729A6NN14 1252 aaPredicted RBP15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 C17orf100A8MU93 164 aa15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 ELOBQ15370 118 aa15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 RBMS3Q6XE24 437 aaKnown RBP15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 TMEM170AQ8WVE7 144 aa15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 CORO2AQ92828 525 aa15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 RAB24Q969Q5 203 aa15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 WDR83OSQ9Y284 106 aa15.23■□□□□ 0.03
PRPF40B-208ENST00000548436 ZNF835Q9Y2P0 537 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms