RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 SERPINA10Q9UK55 444 aa24.65■■□□□ 1.54
SSBP4-210ENST00000601444 SPDYE2BA6NHP3 402 aa24.64■■□□□ 1.54
SSBP4-210ENST00000601444 SMARCA5O60264 1052 aaPredicted RBP24.64■■□□□ 1.54
SSBP4-210ENST00000601444 SPDYE6P0CI01 402 aa24.64■■□□□ 1.54
SSBP4-210ENST00000601444 SNRKQ9NRH2 765 aa24.64■■□□□ 1.54
SSBP4-210ENST00000601444 MYH13Q9UKX3 1938 aa24.64■■□□□ 1.53
SSBP4-210ENST00000601444 SALL1Q9NSC2 1324 aa24.63■■□□□ 1.53
SSBP4-210ENST00000601444 UQCRFS1P1P0C7P4 283 aa24.63■■□□□ 1.53
SSBP4-210ENST00000601444 CST9Q5W186 159 aa24.63■■□□□ 1.53
SSBP4-210ENST00000601444 TBC1D9Q6ZT07 1266 aa24.63■■□□□ 1.53
SSBP4-210ENST00000601444 CLASRPQ8N2M8 674 aaKnown RBP24.63■■□□□ 1.53
SSBP4-210ENST00000601444 SUGT1Q9Y2Z0 365 aa24.63■■□□□ 1.53
SSBP4-210ENST00000601444 PDS5AQ29RF7 1337 aaKnown RBP24.62■■□□□ 1.53
SSBP4-210ENST00000601444 CLRN2A0PK11 232 aa24.62■■□□□ 1.53
SSBP4-210ENST00000601444 SULF1Q8IWU6 871 aa24.62■■□□□ 1.53
SSBP4-210ENST00000601444 ABCF2Q9UG63 623 aa24.62■■□□□ 1.53
SSBP4-210ENST00000601444 LDHBP07195 334 aaKnown RBP24.61■■□□□ 1.53
SSBP4-210ENST00000601444 DIXDC1Q155Q3 683 aa24.61■■□□□ 1.53
SSBP4-210ENST00000601444 LRRCC1Q9C099 1032 aa24.61■■□□□ 1.53
SSBP4-210ENST00000601444 ZNF408Q9H9D4 720 aa24.61■■□□□ 1.53
SSBP4-210ENST00000601444 PITPNM2Q9BZ72 1349 aa24.61■■□□□ 1.53
SSBP4-210ENST00000601444 POLR2AP24928 1970 aaKnown RBP24.6■■□□□ 1.53
SSBP4-210ENST00000601444 TMEM88BA6NKF7 163 aa24.6■■□□□ 1.53
SSBP4-210ENST00000601444 HDLBPQ00341 1268 aaKnown RBP24.6■■□□□ 1.53
SSBP4-210ENST00000601444 PRAMEF18Q5VWM3 479 aa24.6■■□□□ 1.53
SSBP4-210ENST00000601444 TEKT1Q969V4 418 aa24.6■■□□□ 1.53
SSBP4-210ENST00000601444 ZNF512BQ96KM6 892 aaPredicted RBP24.6■■□□□ 1.53
SSBP4-210ENST00000601444 TDRD3Q9H7E2 651 aaKnown RBP24.6■■□□□ 1.53
SSBP4-210ENST00000601444 CEP350Q5VT06 3117 aa24.59■■□□□ 1.53
SSBP4-210ENST00000601444 CELF2O95319 508 aaKnown RBP24.59■■□□□ 1.53
SSBP4-210ENST00000601444 IFIT2P09913 472 aaKnown RBP24.59■■□□□ 1.53
SSBP4-210ENST00000601444 MRIQ9BWK5 157 aa24.59■■□□□ 1.53
SSBP4-210ENST00000601444 CREBZFQ9NS37 354 aa24.59■■□□□ 1.53
SSBP4-210ENST00000601444 NDUFB9Q9Y6M9 179 aa24.59■■□□□ 1.53
SSBP4-210ENST00000601444 ZAP70P43403 619 aa24.58■■□□□ 1.53
SSBP4-210ENST00000601444 APOBEC3HQ6NTF7 200 aaKnown RBP24.58■■□□□ 1.53
SSBP4-210ENST00000601444 ZGPATQ8N5A5 531 aaKnown RBP24.58■■□□□ 1.53
SSBP4-210ENST00000601444 ZDHHC15Q96MV8 337 aa24.58■■□□□ 1.53
SSBP4-210ENST00000601444 MAST3O60307 1309 aa24.58■■□□□ 1.52
SSBP4-210ENST00000601444 MYO1BO43795 1136 aa24.57■■□□□ 1.52
SSBP4-210ENST00000601444 CYP2E1P05181 493 aaPredicted RBP24.57■■□□□ 1.52
SSBP4-210ENST00000601444 HHIPL2Q6UWX4 724 aa24.57■■□□□ 1.52
SSBP4-210ENST00000601444 CDCA5Q96FF9 252 aa24.57■■□□□ 1.52
SSBP4-210ENST00000601444 VEZTQ9HBM0 779 aa24.57■■□□□ 1.52
SSBP4-210ENST00000601444 ZNF70Q9UC06 446 aaPredicted RBP24.57■■□□□ 1.52
SSBP4-210ENST00000601444 AAMPQ13685 434 aa24.56■■□□□ 1.52
SSBP4-210ENST00000601444 SPDYE2Q495Y8 402 aa24.56■■□□□ 1.52
SSBP4-210ENST00000601444 ERICH6Q7L0X2 663 aa24.56■■□□□ 1.52
SSBP4-210ENST00000601444 DNAJC5GQ8N7S2 189 aa24.56■■□□□ 1.52
SSBP4-210ENST00000601444 ZNF384Q8TF68 577 aa24.56■■□□□ 1.52
SSBP4-210ENST00000601444 DAGLAQ9Y4D2 1042 aa24.56■■□□□ 1.52
SSBP4-210ENST00000601444 MECOMQ03112 1051 aa24.55■■□□□ 1.52
SSBP4-210ENST00000601444 HDAC1Q13547 482 aaPredicted RBP24.55■■□□□ 1.52
SSBP4-210ENST00000601444 SPTY2D1Q68D10 685 aaPredicted RBP24.55■■□□□ 1.52
SSBP4-210ENST00000601444 DZIP1Q86YF9 867 aaKnown RBP24.55■■□□□ 1.52
SSBP4-210ENST00000601444 APOBEC3FQ8IUX4 373 aaKnown RBP24.55■■□□□ 1.52
SSBP4-210ENST00000601444 CACNB3P54284 484 aa24.54■■□□□ 1.52
SSBP4-210ENST00000601444 DEFB129Q9H1M3 183 aa24.54■■□□□ 1.52
SSBP4-210ENST00000601444 PIH1D3Q9NQM4 214 aaKnown RBP24.54■■□□□ 1.52
SSBP4-210ENST00000601444 AKAP11Q9UKA4 1901 aa24.54■■□□□ 1.52
SSBP4-210ENST00000601444 IGHDP01880 384 aa24.53■■□□□ 1.52
SSBP4-210ENST00000601444 ANTXR1Q9H6X2 564 aa24.53■■□□□ 1.52
SSBP4-210ENST00000601444 RAI14Q9P0K7 980 aa24.53■■□□□ 1.52
SSBP4-210ENST00000601444 LRP2BPQ9P2M1 347 aa24.53■■□□□ 1.52
SSBP4-210ENST00000601444 ABT1Q9ULW3 272 aaKnown RBP24.53■■□□□ 1.52
SSBP4-210ENST00000601444 TCP10L2B9ZVM9 353 aa24.52■■□□□ 1.52
SSBP4-210ENST00000601444 NSUN4Q96CB9 384 aaKnown RBP24.52■■□□□ 1.52
SSBP4-210ENST00000601444 MKRN1Q9UHC7 482 aaKnown RBP24.52■■□□□ 1.52
SSBP4-210ENST00000601444 RASA3Q14644 834 aa24.51■■□□□ 1.51
SSBP4-210ENST00000601444 TRPM7Q96QT4 1865 aa24.51■■□□□ 1.51
SSBP4-210ENST00000601444 ECM29Q5VYK3 1845 aa24.5■■□□□ 1.51
SSBP4-210ENST00000601444 CDC42EP5Q6NZY7 148 aa24.5■■□□□ 1.51
SSBP4-210ENST00000601444 TLL2Q9Y6L7 1015 aa24.5■■□□□ 1.51
SSBP4-210ENST00000601444 GAKO14976 1311 aa24.5■■□□□ 1.51
SSBP4-210ENST00000601444 MOB2Q70IA6 237 aa24.49■■□□□ 1.51
SSBP4-210ENST00000601444 SAPCD2Q86UD0 394 aa24.49■■□□□ 1.51
SSBP4-210ENST00000601444 FAM163AQ96GL9 167 aaPredicted RBP24.49■■□□□ 1.51
SSBP4-210ENST00000601444 BOLA2Q9H3K6 86 aa24.49■■□□□ 1.51
SSBP4-210ENST00000601444 GBA2Q9HCG7 927 aaPredicted RBP24.49■■□□□ 1.51
SSBP4-210ENST00000601444 MROH7-TTC4A0A0A0MT08 1334 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 ATP5JP18859 108 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 ANKRD45Q5TZF3 282 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 TSHZ3Q63HK5 1081 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 CDAN1Q8IWY9 1227 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 OTUD7AQ8TE49 926 aaPredicted RBP24.48■■□□□ 1.51
SSBP4-210ENST00000601444 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.48■■□□□ 1.51
SSBP4-210ENST00000601444 KLRG1Q96E93 195 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 EDC3Q96F86 508 aaKnown RBP24.48■■□□□ 1.51
SSBP4-210ENST00000601444 DNAJC2Q99543 621 aaKnown RBP24.48■■□□□ 1.51
SSBP4-210ENST00000601444 RWDD1Q9H446 243 aaPredicted RBP24.48■■□□□ 1.51
SSBP4-210ENST00000601444 USP40Q9NVE5 1235 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 FZD1Q9UP38 647 aa24.48■■□□□ 1.51
SSBP4-210ENST00000601444 CNTNAP1P78357 1384 aa24.47■■□□□ 1.51
SSBP4-210ENST00000601444 RASSF10A6NK89 507 aa24.47■■□□□ 1.51
SSBP4-210ENST00000601444 BTDP43251 543 aa24.47■■□□□ 1.51
SSBP4-210ENST00000601444 NBPF12Q5TAG4 269 aaPredicted RBP24.47■■□□□ 1.51
SSBP4-210ENST00000601444 GCC1Q96CN9 775 aa24.47■■□□□ 1.51
SSBP4-210ENST00000601444 TMEM39BQ9GZU3 492 aa24.47■■□□□ 1.51
SSBP4-210ENST00000601444 IDH1O75874 414 aaKnown RBP24.46■■□□□ 1.51
SSBP4-210ENST00000601444 NFIAQ12857 509 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms