RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CAMTA1Q9Y6Y1 1673 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 SCN11AQ9UI33 1791 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 A0A087WZG4 1122 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 BIN1O00499 593 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 FOXP2O15409 715 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 MAST3O60307 1309 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 SLIT3O75094 1523 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 POLR3DP05423 398 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-212ENST00000552491 NCAPHQ15003 741 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ZMYM1Q5SVZ6 1142 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 LMBR1LQ6UX01 489 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 RAB11FIP4Q86YS3 637 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 CEP57L1Q8IYX8 460 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 LINC00301Q8NCQ3 95 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ZNF397Q8NF99 534 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-212ENST00000552491 XPO4Q9C0E2 1151 aaKnown RBP6.32□□□□□ -1.4
LIMA1-212ENST00000552491 KCND1Q9NSA2 647 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 IFNKQ9P0W0 207 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ARFGEF2Q9Y6D5 1785 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 NWD2Q9ULI1 1742 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 M0R2C6 588 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 FANCGO15287 622 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 FOXO4P98177 505 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ATL3Q6DD88 541 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ADALQ6DHV7 355 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 NKX2-3Q8TAU0 364 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 MRPS27Q92552 414 aaKnown RBP6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ERO1AQ96HE7 468 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 PPP1R13BQ96KQ4 1090 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ZNF396Q96N95 335 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-212ENST00000552491 NEUROD6Q96NK8 337 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 SDF4Q9BRK5 362 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 DSCC1Q9BVC3 393 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 HSD3B7Q9H2F3 369 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 PAG1Q9NWQ8 432 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 RTEL1Q9NZ71 1219 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 KIAA1468Q9P260 1216 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 KIF28PB7ZC32 967 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 HMGB1P09429 215 aaKnown RBP6.31□□□□□ -1.4
LIMA1-212ENST00000552491 ZC3H6P61129 1189 aaKnown RBP6.31□□□□□ -1.4
LIMA1-212ENST00000552491 TERF2Q15554 542 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 PTPN21Q16825 1174 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 ERCC6LQ2NKX8 1250 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 LRRC24Q50LG9 513 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 ISM2Q6H9L7 571 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 ZNF771Q7L3S4 317 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-212ENST00000552491 TMC6Q7Z403 805 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 OSBP2Q969R2 916 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 ZNF274Q96GC6 653 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-212ENST00000552491 ZNF594Q96JF6 807 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-212ENST00000552491 FMNL2Q96PY5 1086 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 HELLSQ9NRZ9 838 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 SLU7O95391 586 aaKnown RBP6.31□□□□□ -1.4
LIMA1-212ENST00000552491 ATP1A3P13637 1013 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 PHKG2P15735 406 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 HAND2P61296 217 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 GABPB1Q06547 395 aaPredicted RBP6.31□□□□□ -1.4
LIMA1-212ENST00000552491 CCDC93Q567U6 631 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 SYT10Q6XYQ8 523 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 L2HGDHQ9H9P8 463 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 FBXO3Q9UK99 471 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 HPS5Q9UPZ3 1129 aa6.31□□□□□ -1.4
LIMA1-212ENST00000552491 MROH7-TTC4A0A0A0MT08 1334 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 A0A1W2PQ27 194 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 A0A1W2PQ64 194 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 A0A1W2PQD8 194 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 WDHD1O75717 1129 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-212ENST00000552491 SMC2O95347 1197 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 PTGER2P43116 358 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 VASPP50552 380 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-212ENST00000552491 HSP90AB3PQ58FF7 597 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 AXDND1Q5T1B0 1012 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-212ENST00000552491 KRT222Q8N1A0 295 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 EFCAB3Q8N7B9 438 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 DPF2Q92785 391 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 PUS3Q9BZE2 481 aaKnown RBP6.3□□□□□ -1.4
LIMA1-212ENST00000552491 DENND2AQ9ULE3 1009 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 MEGF6O75095 1541 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 GLI3P10071 1580 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 NBPF26B4DH59 902 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 ZNF202O95125 648 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 H2AFXP16104 143 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-212ENST00000552491 LMOD1P29536 600 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-212ENST00000552491 EVCP57679 992 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 ANTXR2P58335 489 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 GOLGA8FQ08AF8 430 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 GOLGA8DPQ0D2H9 430 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 STK38Q15208 465 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 ARSIQ5FYB1 569 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 NBPF14Q5TI25 921 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 MYSM1Q5VVJ2 828 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 NBPF10Q6P3W6 841 aaKnown RBP6.3□□□□□ -1.4
LIMA1-212ENST00000552491 NBPF15Q8N660 670 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 AIFM3Q96NN9 605 aa6.3□□□□□ -1.4
LIMA1-212ENST00000552491 H7C1W4 665 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 KIF2AO00139 706 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 SPTLC2O15270 562 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 CYP27B1O15528 508 aa6.29□□□□□ -1.4
LIMA1-212ENST00000552491 RNF113AO15541 343 aaKnown RBP6.29□□□□□ -1.4
LIMA1-212ENST00000552491 SNRPA1P09661 255 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms