RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CHMP4BQ9H444 224 aaKnown RBP12□□□□□ -0.49
RNF4-221ENST00000513643 ZNF70Q9UC06 446 aaPredicted RBP12□□□□□ -0.49
RNF4-221ENST00000513643 ABT1Q9ULW3 272 aaKnown RBP12□□□□□ -0.49
RNF4-221ENST00000513643 SCAF8Q9UPN6 1271 aaKnown RBP12□□□□□ -0.49
RNF4-221ENST00000513643 PPP2R3BQ9Y5P8 575 aa12□□□□□ -0.49
RNF4-221ENST00000513643 FPGT-TNNI3KV9GXZ4 949 aa12□□□□□ -0.49
RNF4-221ENST00000513643 WDR33Q9C0J8 1336 aaKnown RBP12□□□□□ -0.49
RNF4-221ENST00000513643 ARAP2Q8WZ64 1704 aa12□□□□□ -0.49
RNF4-221ENST00000513643 FAM155AB1AL88 458 aaPredicted RBP11.99□□□□□ -0.49
RNF4-221ENST00000513643 FRAT2O75474 233 aaPredicted RBP11.99□□□□□ -0.49
RNF4-221ENST00000513643 PRDX5P30044 214 aa11.99□□□□□ -0.49
RNF4-221ENST00000513643 MAP3K11Q16584 847 aa11.99□□□□□ -0.49
RNF4-221ENST00000513643 FKBP1CQ5VVH2 108 aa11.99□□□□□ -0.49
RNF4-221ENST00000513643 PRAMEF18Q5VWM3 479 aa11.99□□□□□ -0.49
RNF4-221ENST00000513643 EAF2Q96CJ1 260 aaPredicted RBP11.99□□□□□ -0.49
RNF4-221ENST00000513643 WBP1LQ9NX94 342 aa11.99□□□□□ -0.49
RNF4-221ENST00000513643 HMG20BQ9P0W2 317 aa11.99□□□□□ -0.49
RNF4-221ENST00000513643 MAP2K2P36507 400 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 LDLRAD1Q5T700 205 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 CYP4F22Q6NT55 531 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 C2orf69Q8N8R5 385 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 ZNF384Q8TF68 577 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 TEKT1Q969V4 418 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 CAPNS2Q96L46 248 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 TEPSINQ96N21 525 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 TDRD3Q9H7E2 651 aaKnown RBP11.98□□□□□ -0.49
RNF4-221ENST00000513643 ZNF408Q9H9D4 720 aa11.98□□□□□ -0.49
RNF4-221ENST00000513643 DBNLQ9UJU6 430 aaKnown RBP11.98□□□□□ -0.49
RNF4-221ENST00000513643 GAKO14976 1311 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 MAST3O60307 1309 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 CLRN2A0PK11 232 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 MYO1BO43795 1136 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 ECE1P42892 770 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 MCAMP43121 646 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 RRP1P56182 461 aaKnown RBP11.97□□□□□ -0.49
RNF4-221ENST00000513643 HUNKP57058 714 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 RASA3Q14644 834 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 NEUROD6Q96NK8 337 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 DBNDD2Q9BQY9 259 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 EXOC6BQ9Y2D4 811 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 DAGLAQ9Y4D2 1042 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 THSD7BQ9C0I4 1608 aa11.97□□□□□ -0.49
RNF4-221ENST00000513643 SSC5DA1L4H1 1573 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 UNCXA6NJT0 531 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 IGSF3O75054 1194 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 LDHBP07195 334 aaKnown RBP11.96□□□□□ -0.49
RNF4-221ENST00000513643 UQCRFS1P1P0C7P4 283 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 HSP90AB4PQ58FF6 505 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 RGMBQ6NW40 437 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 PI16Q6UXB8 463 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 MOB2Q70IA6 237 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 FAM83AQ86UY5 434 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 ERC1Q8IUD2 1116 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 ZGPATQ8N5A5 531 aaKnown RBP11.96□□□□□ -0.49
RNF4-221ENST00000513643 SPATA5Q8NB90 893 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 RHPN1Q8TCX5 695 aa11.96□□□□□ -0.49
RNF4-221ENST00000513643 TLR7Q9NYK1 1049 aaKnown RBP11.96□□□□□ -0.49
RNF4-221ENST00000513643 RAB11FIP3O75154 756 aa11.95□□□□□ -0.5
RNF4-221ENST00000513643 HMMRO75330 724 aa11.95□□□□□ -0.5
RNF4-221ENST00000513643 RBM5P52756 815 aaKnown RBP eCLIP11.95□□□□□ -0.5
RNF4-221ENST00000513643 DIXDC1Q155Q3 683 aa11.95□□□□□ -0.5
RNF4-221ENST00000513643 NBPF12Q5TAG4 269 aaPredicted RBP11.95□□□□□ -0.5
RNF4-221ENST00000513643 CDC42EP5Q6NZY7 148 aa11.95□□□□□ -0.5
RNF4-221ENST00000513643 CCDC102AQ96A19 550 aa11.95□□□□□ -0.5
RNF4-221ENST00000513643 ZIC5Q96T25 663 aa11.95□□□□□ -0.5
RNF4-221ENST00000513643 PAPPA2Q9BXP8 1791 aa11.95□□□□□ -0.5
RNF4-221ENST00000513643 UBE2Q2LH0YL09 131 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 AOC2O75106 756 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 USP2O75604 605 aaPredicted RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 SLC10A3P09131 477 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 HSPA1AP0DMV8 641 aaKnown RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 HSPA1BP0DMV9 641 aaKnown RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 MAP2K1Q02750 393 aaPredicted RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 NOGQ13253 232 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 TNFAIP1Q13829 316 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 SUPT20HL1Q3ZLR7 823 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 SPTY2D1Q68D10 685 aaPredicted RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 CDAN1Q8IWY9 1227 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 NSUN4Q96CB9 384 aaKnown RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 KIF1BPQ96EK5 621 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 YTHDC1Q96MU7 727 aaKnown RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 CCDC8Q9H0W5 538 aaPredicted RBP11.94□□□□□ -0.5
RNF4-221ENST00000513643 DCTPP1Q9H773 170 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 PCDHB15Q9Y5E8 787 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 ECM29Q5VYK3 1845 aa11.94□□□□□ -0.5
RNF4-221ENST00000513643 RFX7Q2KHR2 1363 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 GPR75-ASB3A0A0A6YYF3 556 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 CYP2E1P05181 493 aaPredicted RBP11.93□□□□□ -0.5
RNF4-221ENST00000513643 MECOMQ03112 1051 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 OS9Q13438 667 aaPredicted RBP11.93□□□□□ -0.5
RNF4-221ENST00000513643 CCDC158Q5M9N0 1113 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 TBC1D9Q6ZT07 1266 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 IDI2Q9BXS1 227 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 TMEM39BQ9GZU3 492 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 VEZTQ9HBM0 779 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 AKAP11Q9UKA4 1901 aa11.93□□□□□ -0.5
RNF4-221ENST00000513643 RPAP1Q9BWH6 1393 aaPredicted RBP11.92□□□□□ -0.5
RNF4-221ENST00000513643 TCP10L2B9ZVM9 353 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 NPM3O75607 178 aaKnown RBP11.92□□□□□ -0.5
RNF4-221ENST00000513643 NF2P35240 595 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms