RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 FSTL1Q12841 308 aa23.77■■□□□ 1.4
HDAC4-212ENST00000495497 B4GALNT3Q6L9W6 998 aa23.77■■□□□ 1.4
HDAC4-212ENST00000495497 ZC3H15Q8WU90 426 aaKnown RBP23.77■■□□□ 1.4
HDAC4-212ENST00000495497 GGA3Q9NZ52 723 aa23.77■■□□□ 1.4
HDAC4-212ENST00000495497 SCAF8Q9UPN6 1271 aaKnown RBP23.77■■□□□ 1.4
HDAC4-212ENST00000495497 SUGT1Q9Y2Z0 365 aa23.77■■□□□ 1.4
HDAC4-212ENST00000495497 MYH13Q9UKX3 1938 aa23.76■■□□□ 1.39
HDAC4-212ENST00000495497 CYP2E1P05181 493 aaPredicted RBP23.76■■□□□ 1.39
HDAC4-212ENST00000495497 FMR1Q06787 632 aaKnown RBP eCLIP23.76■■□□□ 1.39
HDAC4-212ENST00000495497 DIXDC1Q155Q3 683 aa23.76■■□□□ 1.39
HDAC4-212ENST00000495497 ANGEL2Q5VTE6 544 aaKnown RBP23.76■■□□□ 1.39
HDAC4-212ENST00000495497 DLK2Q6UY11 383 aa23.76■■□□□ 1.39
HDAC4-212ENST00000495497 OTUD7AQ8TE49 926 aaPredicted RBP23.76■■□□□ 1.39
HDAC4-212ENST00000495497 PRMT6Q96LA8 375 aaPredicted RBP23.76■■□□□ 1.39
HDAC4-212ENST00000495497 SERPINA10Q9UK55 444 aa23.76■■□□□ 1.39
HDAC4-212ENST00000495497 ITGBL1O95965 494 aaPredicted RBP23.75■■□□□ 1.39
HDAC4-212ENST00000495497 SMC5Q8IY18 1101 aa23.75■■□□□ 1.39
HDAC4-212ENST00000495497 ZGPATQ8N5A5 531 aaKnown RBP23.75■■□□□ 1.39
HDAC4-212ENST00000495497 MTMR14Q8NCE2 650 aa23.75■■□□□ 1.39
HDAC4-212ENST00000495497 GLIS2Q9BZE0 524 aaPredicted RBP23.75■■□□□ 1.39
HDAC4-212ENST00000495497 SPDYE2BA6NHP3 402 aa23.74■■□□□ 1.39
HDAC4-212ENST00000495497 SPDYE6P0CI01 402 aa23.74■■□□□ 1.39
HDAC4-212ENST00000495497 TSHZ3Q63HK5 1081 aa23.74■■□□□ 1.39
HDAC4-212ENST00000495497 ERICH6Q7L0X2 663 aa23.74■■□□□ 1.39
HDAC4-212ENST00000495497 USP48Q86UV5 1035 aa23.74■■□□□ 1.39
HDAC4-212ENST00000495497 TEKT1Q969V4 418 aa23.74■■□□□ 1.39
HDAC4-212ENST00000495497 DCPSQ96C86 337 aaKnown RBP23.74■■□□□ 1.39
HDAC4-212ENST00000495497 PIH1D3Q9NQM4 214 aaKnown RBP23.74■■□□□ 1.39
HDAC4-212ENST00000495497 TRAF5O00463 557 aa23.73■■□□□ 1.39
HDAC4-212ENST00000495497 SPTY2D1Q68D10 685 aaPredicted RBP23.73■■□□□ 1.39
HDAC4-212ENST00000495497 BOLA2Q9H3K6 86 aa23.73■■□□□ 1.39
HDAC4-212ENST00000495497 ANTXR1Q9H6X2 564 aa23.73■■□□□ 1.39
HDAC4-212ENST00000495497 RAI14Q9P0K7 980 aa23.73■■□□□ 1.39
HDAC4-212ENST00000495497 MAST3O60307 1309 aa23.73■■□□□ 1.39
HDAC4-212ENST00000495497 CLRN2A0PK11 232 aa23.72■■□□□ 1.39
HDAC4-212ENST00000495497 ADM5C9JUS6 153 aa23.72■■□□□ 1.39
HDAC4-212ENST00000495497 HDLBPQ00341 1268 aaKnown RBP23.72■■□□□ 1.39
HDAC4-212ENST00000495497 DZIP1Q86YF9 867 aaKnown RBP23.72■■□□□ 1.39
HDAC4-212ENST00000495497 ZNF384Q8TF68 577 aa23.72■■□□□ 1.39
HDAC4-212ENST00000495497 DNAJC2Q99543 621 aaKnown RBP23.72■■□□□ 1.39
HDAC4-212ENST00000495497 LRP2BPQ9P2M1 347 aa23.72■■□□□ 1.39
HDAC4-212ENST00000495497 ZBTB47Q9UFB7 747 aaPredicted RBP23.72■■□□□ 1.39
HDAC4-212ENST00000495497 AKAP11Q9UKA4 1901 aa23.71■■□□□ 1.39
HDAC4-212ENST00000495497 ATP5JP18859 108 aa23.71■■□□□ 1.39
HDAC4-212ENST00000495497 MECOMQ03112 1051 aa23.71■■□□□ 1.39
HDAC4-212ENST00000495497 HHIPL2Q6UWX4 724 aa23.71■■□□□ 1.39
HDAC4-212ENST00000495497 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.71■■□□□ 1.39
HDAC4-212ENST00000495497 EDC3Q96F86 508 aaKnown RBP23.71■■□□□ 1.39
HDAC4-212ENST00000495497 MRIQ9BWK5 157 aa23.71■■□□□ 1.39
HDAC4-212ENST00000495497 LNPKQ9C0E8 428 aa23.71■■□□□ 1.39
HDAC4-212ENST00000495497 TDRD3Q9H7E2 651 aaKnown RBP23.71■■□□□ 1.39
HDAC4-212ENST00000495497 ECHDC1Q9NTX5 307 aa23.71■■□□□ 1.39
HDAC4-212ENST00000495497 PASKQ96RG2 1323 aa23.7■■□□□ 1.38
HDAC4-212ENST00000495497 APOBEC3HQ6NTF7 200 aaKnown RBP23.7■■□□□ 1.38
HDAC4-212ENST00000495497 CDC37L1Q7L3B6 337 aa23.7■■□□□ 1.38
HDAC4-212ENST00000495497 KRT26Q7Z3Y9 468 aa23.7■■□□□ 1.38
HDAC4-212ENST00000495497 NSUN4Q96CB9 384 aaKnown RBP23.7■■□□□ 1.38
HDAC4-212ENST00000495497 DAGLAQ9Y4D2 1042 aa23.7■■□□□ 1.38
HDAC4-212ENST00000495497 NEFLP07196 543 aa23.69■■□□□ 1.38
HDAC4-212ENST00000495497 ZDHHC15Q96MV8 337 aa23.69■■□□□ 1.38
HDAC4-212ENST00000495497 VEZTQ9HBM0 779 aa23.69■■□□□ 1.38
HDAC4-212ENST00000495497 GOLIM4O00461 696 aa23.68■■□□□ 1.38
HDAC4-212ENST00000495497 NUCB1Q02818 461 aa23.68■■□□□ 1.38
HDAC4-212ENST00000495497 ZNF70Q9UC06 446 aaPredicted RBP23.68■■□□□ 1.38
HDAC4-212ENST00000495497 PITPNM2Q9BZ72 1349 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 MYO1BO43795 1136 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 CACNB3P54284 484 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 PRAMEF18Q5VWM3 479 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 CHD1LQ86WJ1 897 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 SULF1Q8IWU6 871 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 GPATCH3Q96I76 525 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 HAUS7Q99871 368 aa23.67■■□□□ 1.38
HDAC4-212ENST00000495497 SALL3Q9BXA9 1300 aa23.66■■□□□ 1.38
HDAC4-212ENST00000495497 IDH1O75874 414 aaKnown RBP23.66■■□□□ 1.38
HDAC4-212ENST00000495497 SPDYE2Q495Y8 402 aa23.66■■□□□ 1.38
HDAC4-212ENST00000495497 MX1P20591 662 aa23.65■■□□□ 1.38
HDAC4-212ENST00000495497 ZNF408Q9H9D4 720 aa23.65■■□□□ 1.38
HDAC4-212ENST00000495497 PAG1Q9NWQ8 432 aa23.65■■□□□ 1.38
HDAC4-212ENST00000495497 MROH7-TTC4A0A0A0MT08 1334 aa23.64■■□□□ 1.38
HDAC4-212ENST00000495497 GAKO14976 1311 aa23.64■■□□□ 1.38
HDAC4-212ENST00000495497 TCP10L2B9ZVM9 353 aa23.64■■□□□ 1.37
HDAC4-212ENST00000495497 MAP4K4O95819 1239 aaPredicted RBP23.64■■□□□ 1.37
HDAC4-212ENST00000495497 HSPA6P17066 643 aa23.64■■□□□ 1.37
HDAC4-212ENST00000495497 BTDP43251 543 aa23.64■■□□□ 1.37
HDAC4-212ENST00000495497 APLP1P51693 650 aa23.64■■□□□ 1.37
HDAC4-212ENST00000495497 HTRA3P83110 453 aa23.64■■□□□ 1.37
HDAC4-212ENST00000495497 NAA16Q6N069 864 aaPredicted RBP23.64■■□□□ 1.37
HDAC4-212ENST00000495497 CDC42EP5Q6NZY7 148 aa23.64■■□□□ 1.37
HDAC4-212ENST00000495497 APOBEC3FQ8IUX4 373 aaKnown RBP23.64■■□□□ 1.37
HDAC4-212ENST00000495497 PI4K2BQ8TCG2 481 aa23.64■■□□□ 1.37
HDAC4-212ENST00000495497 FAM163AQ96GL9 167 aaPredicted RBP23.64■■□□□ 1.37
HDAC4-212ENST00000495497 TTC41PQ6P2S7 1318 aa23.63■■□□□ 1.37
HDAC4-212ENST00000495497 GSTO1P78417 241 aa23.63■■□□□ 1.37
HDAC4-212ENST00000495497 TTF1Q15361 905 aaPredicted RBP23.63■■□□□ 1.37
HDAC4-212ENST00000495497 ADGRA1Q86SQ6 560 aa23.63■■□□□ 1.37
HDAC4-212ENST00000495497 SLF2Q8IX21 1173 aa23.63■■□□□ 1.37
HDAC4-212ENST00000495497 CDCA5Q96FF9 252 aa23.63■■□□□ 1.37
HDAC4-212ENST00000495497 USP40Q9NVE5 1235 aa23.63■■□□□ 1.37
HDAC4-212ENST00000495497 POLR2AP24928 1970 aaKnown RBP23.63■■□□□ 1.37
HDAC4-212ENST00000495497 CELF2O95319 508 aaKnown RBP23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 210 ms