RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CASQ1P31415 396 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 KIF6Q6ZMV9 814 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 PUF60Q9UHX1 559 aaKnown RBP13.7□□□□□ -0.22
HMGB1-206ENST00000405805 MPHOSPH10O00566 681 aaKnown RBP13.69□□□□□ -0.22
HMGB1-206ENST00000405805 TMEM87AQ8NBN3 555 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 ZCRB1Q8TBF4 217 aaKnown RBP13.69□□□□□ -0.22
HMGB1-206ENST00000405805 SLC12A7Q9Y666 1083 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 USP32Q8NFA0 1604 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 B4E1Z4 1266 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 CBFA2T2O43439 604 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 CAPN2P17655 700 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 CCDC102BQ68D86 513 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 TTLL7Q6ZT98 887 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 CLIC6Q96NY7 704 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 TECPR2O15040 1411 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 RNF113AO15541 343 aaKnown RBP13.69□□□□□ -0.22
HMGB1-206ENST00000405805 RAD21O60216 631 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 SART3Q15020 963 aaKnown RBP13.69□□□□□ -0.22
HMGB1-206ENST00000405805 KCNG4Q8TDN1 519 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 STAMQ92783 540 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 TMOD3Q9NYL9 352 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 LRP2BPQ9P2M1 347 aa13.69□□□□□ -0.22
HMGB1-206ENST00000405805 HOXB7P09629 217 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 SSR1P43307 286 aaKnown RBP13.68□□□□□ -0.22
HMGB1-206ENST00000405805 CAVIN2O95810 425 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 IGKV5-2P06315 115 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 FANCCQ00597 558 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 GPIHBP1Q8IV16 184 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 NUTM2BA6NNL0 878 aaPredicted RBP13.68□□□□□ -0.22
HMGB1-206ENST00000405805 NUTM2EB1AL46 878 aaPredicted RBP13.68□□□□□ -0.22
HMGB1-206ENST00000405805 PNOCQ13519 176 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 PPP2R5AQ15172 486 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 NUTM2AQ8IVF1 878 aaPredicted RBP13.68□□□□□ -0.22
HMGB1-206ENST00000405805 NSUN7Q8NE18 718 aaKnown RBP13.68□□□□□ -0.22
HMGB1-206ENST00000405805 RUFY1Q96T51 708 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 MPHOSPH8Q99549 860 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 HSPD1P10809 573 aaKnown RBP13.68□□□□□ -0.22
HMGB1-206ENST00000405805 DCAF5Q96JK2 942 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 ST7Q9NRC1 585 aa13.68□□□□□ -0.22
HMGB1-206ENST00000405805 CEP170BQ9Y4F5 1589 aaPredicted RBP13.67□□□□□ -0.22
HMGB1-206ENST00000405805 COBLO75128 1261 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 ATP1A3P13637 1013 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 ATP5JP18859 108 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 NAP1L1P55209 391 aaKnown RBP13.67□□□□□ -0.22
HMGB1-206ENST00000405805 ZNF622Q969S3 477 aaKnown RBP eCLIP13.67□□□□□ -0.228e-11■■■■■ 55.4
HMGB1-206ENST00000405805 UBAC1Q9BSL1 405 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 GOLPH3LQ9H4A5 285 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 KIF2AO00139 706 aaPredicted RBP13.67□□□□□ -0.22
HMGB1-206ENST00000405805 PHKG2P15735 406 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 TDRD7Q8NHU6 1098 aaKnown RBP13.67□□□□□ -0.22
HMGB1-206ENST00000405805 CAGE1Q8TC20 777 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 DESI2Q9BSY9 194 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 EPC1Q9H2F5 836 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 TRMT112Q9UI30 125 aaKnown RBP13.67□□□□□ -0.22
HMGB1-206ENST00000405805 ADAMTS2O95450 1211 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 ADKP55263 362 aaKnown RBP13.67□□□□□ -0.22
HMGB1-206ENST00000405805 RESTQ13127 1097 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 FILIP1LQ4L180 1135 aa13.67□□□□□ -0.22
HMGB1-206ENST00000405805 SALL3Q9BXA9 1300 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 KDRP35968 1356 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 ZBTB43O43298 467 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 CDKL5O76039 1030 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 IPO7O95373 1038 aaKnown RBP13.66□□□□□ -0.22
HMGB1-206ENST00000405805 MAP2K2P36507 400 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 ZAP70P43403 619 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 DNA2P51530 1060 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 MIGA1Q8NAN2 632 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 PDIA3P30101 505 aaKnown RBP13.66□□□□□ -0.22
HMGB1-206ENST00000405805 CCDC150Q8NCX0 1101 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 RAI14Q9P0K7 980 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 KIAA1468Q9P260 1216 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 ERBB3P21860 1342 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 ZSCAN12O43309 604 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 RANBP6O60518 1105 aaKnown RBP13.66□□□□□ -0.22
HMGB1-206ENST00000405805 IL15P40933 162 aaPredicted RBP13.66□□□□□ -0.22
HMGB1-206ENST00000405805 ANO1Q5XXA6 986 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 KCNJ14Q9UNX9 436 aa13.66□□□□□ -0.22
HMGB1-206ENST00000405805 CCP110O43303 1012 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 EPB41L2O43491 1005 aaKnown RBP13.65□□□□□ -0.22
HMGB1-206ENST00000405805 EVCP57679 992 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 LONRF3Q496Y0 759 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.65□□□□□ -0.22
HMGB1-206ENST00000405805 CEP57Q86XR8 500 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 DHX58Q96C10 678 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 ERO1AQ96HE7 468 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 MAPK8IP1Q9UQF2 711 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 TMEM94Q12767 1356 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 ADORA1P30542 326 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 ST3GAL1Q11201 340 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 EIF3JO75822 258 aaKnown RBP13.65□□□□□ -0.22
HMGB1-206ENST00000405805 NF2P35240 595 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 PTPN12Q05209 780 aaKnown RBP13.65□□□□□ -0.22
HMGB1-206ENST00000405805 SSRP1Q08945 709 aaKnown RBP13.65□□□□□ -0.22
HMGB1-206ENST00000405805 MTX1Q13505 466 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 LRCH2Q5VUJ6 765 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 SPTLC3Q9NUV7 552 aa13.65□□□□□ -0.22
HMGB1-206ENST00000405805 BICDL1Q6ZP65 573 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 SMARCE1Q969G3 411 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 AKAP2Q9Y2D5 859 aa13.64□□□□□ -0.23
HMGB1-206ENST00000405805 GPAA1O43292 621 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms