RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 DDX24Q9GZR7 859 aaKnown RBP eCLIP29.45■■■□□ 2.31
C9orf40-201ENST00000376854 SPTLC2O15270 562 aa29.45■■■□□ 2.3
C9orf40-201ENST00000376854 WDR19Q8NEZ3 1342 aa29.45■■■□□ 2.3
C9orf40-201ENST00000376854 GPTP24298 496 aa29.44■■■□□ 2.3
C9orf40-201ENST00000376854 GJB4Q9NTQ9 266 aa29.44■■■□□ 2.3
C9orf40-201ENST00000376854 RIC1Q4ADV7 1423 aa29.44■■■□□ 2.3
C9orf40-201ENST00000376854 SMTNL1A8MU46 457 aa29.44■■■□□ 2.3
C9orf40-201ENST00000376854 MCAMP43121 646 aa29.44■■■□□ 2.3
C9orf40-201ENST00000376854 RIPOR2Q9Y4F9 1068 aa29.44■■■□□ 2.3
C9orf40-201ENST00000376854 KIAA1468Q9P260 1216 aa29.43■■■□□ 2.3
C9orf40-201ENST00000376854 LDHAL6AQ6ZMR3 332 aa29.43■■■□□ 2.3
C9orf40-201ENST00000376854 SYNE3Q6ZMZ3 975 aa29.43■■■□□ 2.3
C9orf40-201ENST00000376854 SLC4A9Q96Q91 983 aa29.43■■■□□ 2.3
C9orf40-201ENST00000376854 TEX13AQ9BXU3 409 aaPredicted RBP29.43■■■□□ 2.3
C9orf40-201ENST00000376854 RBM6P78332 1123 aaKnown RBP29.42■■■□□ 2.3
C9orf40-201ENST00000376854 FILIP1Q7Z7B0 1213 aa29.42■■■□□ 2.3
C9orf40-201ENST00000376854 ANKRD7Q92527 254 aa29.42■■■□□ 2.3
C9orf40-201ENST00000376854 NHSL1Q5SYE7 1610 aa29.42■■■□□ 2.3
C9orf40-201ENST00000376854 KIF28PB7ZC32 967 aa29.42■■■□□ 2.3
C9orf40-201ENST00000376854 STARD3NLO95772 234 aa29.42■■■□□ 2.3
C9orf40-201ENST00000376854 ZRSR1Q15695 479 aaKnown RBP29.42■■■□□ 2.3
C9orf40-201ENST00000376854 PAXBP1Q9Y5B6 917 aa29.42■■■□□ 2.3
C9orf40-201ENST00000376854 KDM4FA0A1W2PPD8 638 aa29.41■■■□□ 2.3
C9orf40-201ENST00000376854 ITGA6P23229 1130 aa29.41■■■□□ 2.3
C9orf40-201ENST00000376854 TRDNQ13061 729 aa29.41■■■□□ 2.3
C9orf40-201ENST00000376854 MAP3K15Q6ZN16 1313 aa29.41■■■□□ 2.3
C9orf40-201ENST00000376854 SKILP12757 684 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 ADD2P35612 726 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 KIF23Q02241 960 aaPredicted RBP29.4■■■□□ 2.3
C9orf40-201ENST00000376854 PDCL2Q8N4E4 241 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 NBPF3Q9H094 633 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 GREM2Q9H772 168 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 PPP4R3BQ5MIZ7 849 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 SLC9C2Q5TAH2 1124 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 GIGYF2Q6Y7W6 1299 aaKnown RBP29.4■■■□□ 2.3
C9orf40-201ENST00000376854 CDHR2Q9BYE9 1310 aa29.4■■■□□ 2.3
C9orf40-201ENST00000376854 CCDC69A6NI79 296 aa29.39■■■□□ 2.3
C9orf40-201ENST00000376854 ANO1Q5XXA6 986 aa29.39■■■□□ 2.3
C9orf40-201ENST00000376854 TTLL11Q8NHH1 800 aa29.39■■■□□ 2.3
C9orf40-201ENST00000376854 DPCR1Q3MIW9 517 aa29.39■■■□□ 2.3
C9orf40-201ENST00000376854 CNNM1Q9NRU3 951 aa29.39■■■□□ 2.3
C9orf40-201ENST00000376854 DENND2AQ9ULE3 1009 aa29.38■■■□□ 2.29
C9orf40-201ENST00000376854 ANGEL1Q9UNK9 670 aaKnown RBP29.38■■■□□ 2.29
C9orf40-201ENST00000376854 NEDD4P46934 1319 aa29.38■■■□□ 2.29
C9orf40-201ENST00000376854 ITGB4P16144 1822 aa29.38■■■□□ 2.29
C9orf40-201ENST00000376854 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.38■■■□□ 2.29
C9orf40-201ENST00000376854 TTF1Q15361 905 aaPredicted RBP29.38■■■□□ 2.29
C9orf40-201ENST00000376854 NLRP10Q86W26 655 aa29.38■■■□□ 2.29
C9orf40-201ENST00000376854 ANKRD18BA2A2Z9 1011 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 ZNF202O95125 648 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 TBC1D10CQ8IV04 446 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 ZNF512BQ96KM6 892 aaPredicted RBP29.37■■■□□ 2.29
C9orf40-201ENST00000376854 BPIFA3Q9BQP9 254 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 ZMYM6O95789 1325 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 SLC3A2P08195 630 aaKnown RBP29.37■■■□□ 2.29
C9orf40-201ENST00000376854 CTSWP56202 376 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 CCZ1BP86790 482 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 CCZ1P86791 482 aaPredicted RBP29.37■■■□□ 2.29
C9orf40-201ENST00000376854 CEP135Q66GS9 1140 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 CCDC112Q8NEF3 446 aa29.37■■■□□ 2.29
C9orf40-201ENST00000376854 USP27XA6NNY8 438 aa29.36■■■□□ 2.29
C9orf40-201ENST00000376854 APPP05067 770 aa29.36■■■□□ 2.29
C9orf40-201ENST00000376854 AXDND1Q5T1B0 1012 aaPredicted RBP29.36■■■□□ 2.29
C9orf40-201ENST00000376854 CYB5R4Q7L1T6 521 aa29.36■■■□□ 2.29
C9orf40-201ENST00000376854 PIH1D3Q9NQM4 214 aaKnown RBP29.36■■■□□ 2.29
C9orf40-201ENST00000376854 KAT6BQ8WYB5 2073 aa29.36■■■□□ 2.29
C9orf40-201ENST00000376854 IDH1O75874 414 aaKnown RBP29.36■■■□□ 2.29
C9orf40-201ENST00000376854 CYP19A1P11511 503 aaPredicted RBP29.36■■■□□ 2.29
C9orf40-201ENST00000376854 METAP2P50579 478 aaKnown RBP eCLIP29.36■■■□□ 2.29
C9orf40-201ENST00000376854 ZBTB1Q9Y2K1 713 aa29.36■■■□□ 2.29
C9orf40-201ENST00000376854 DDX60Q8IY21 1712 aaKnown RBP29.35■■■□□ 2.29
C9orf40-201ENST00000376854 CMA1P23946 247 aa29.35■■■□□ 2.29
C9orf40-201ENST00000376854 SYTL4Q96C24 671 aaPredicted RBP29.35■■■□□ 2.29
C9orf40-201ENST00000376854 ALG1Q9BT22 464 aa29.35■■■□□ 2.29
C9orf40-201ENST00000376854 SH2B2O14492 632 aaPredicted RBP29.34■■■□□ 2.29
C9orf40-201ENST00000376854 PFKFB1P16118 471 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 GSDMDP57764 484 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 UBE3CQ15386 1083 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 NBPF11Q86T75 865 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 SMAP1Q8IYB5 467 aaPredicted RBP29.34■■■□□ 2.29
C9orf40-201ENST00000376854 VGLL2Q8N8G2 317 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 RGS22Q8NE09 1264 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 NKX2-3Q8TAU0 364 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 ZNF592Q92610 1267 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 DISP2A7MBM2 1401 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 ATRNO75882 1429 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 BIN1O00499 593 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 NCBP1Q09161 790 aaKnown RBP29.34■■■□□ 2.29
C9orf40-201ENST00000376854 AIFM3Q96NN9 605 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 BCL9O00512 1426 aa29.34■■■□□ 2.29
C9orf40-201ENST00000376854 CDKL5O76039 1030 aa29.33■■■□□ 2.29
C9orf40-201ENST00000376854 SLC39A14Q15043 492 aa29.33■■■□□ 2.29
C9orf40-201ENST00000376854 ZNF532Q9HCE3 1301 aa29.33■■■□□ 2.29
C9orf40-201ENST00000376854 NLRP12P59046 1061 aa29.33■■■□□ 2.29
C9orf40-201ENST00000376854 SYCP1Q15431 976 aa29.33■■■□□ 2.29
C9orf40-201ENST00000376854 MYH7P12883 1935 aa29.33■■■□□ 2.29
C9orf40-201ENST00000376854 IRS4O14654 1257 aaPredicted RBP29.32■■■□□ 2.28
C9orf40-201ENST00000376854 WDHD1O75717 1129 aaPredicted RBP29.32■■■□□ 2.28
C9orf40-201ENST00000376854 RXRAP19793 462 aa29.32■■■□□ 2.28
C9orf40-201ENST00000376854 MARCKSP29966 332 aaPredicted RBP29.32■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms