RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 URI1O94763 535 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-202ENST00000372216 MSL1Q68DK7 614 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 RAB3IL1Q8TBN0 382 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 FAM107BQ9H098 131 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 RBM28Q9NW13 759 aaKnown RBP11.12□□□□□ -0.63
COL4A6-202ENST00000372216 RNF216Q9NWF9 866 aaPredicted RBP11.12□□□□□ -0.63
COL4A6-202ENST00000372216 SPECC1Q5M775 1068 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 MAATS1Q7Z4T9 603 aa11.12□□□□□ -0.63
COL4A6-202ENST00000372216 SUPT20HQ8NEM7 779 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 ZSWIM4Q9H7M6 989 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 GPCPD1Q9NPB8 672 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 USP25Q9UHP3 1055 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 USP19O94966 1318 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 GCOM1H8Y6P7 765 aaPredicted RBP11.11□□□□□ -0.63
COL4A6-202ENST00000372216 POLR3GO15318 223 aaPredicted RBP11.11□□□□□ -0.63
COL4A6-202ENST00000372216 MYZAPP0CAP1 466 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 KRT13P13646 458 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 CALML3P27482 149 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 MCM7P33993 719 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 TIMM10P62072 90 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 MAST3O60307 1309 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 ASIC1P78348 528 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 CCDC50Q8IVM0 306 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 KLHDC4Q8TBB5 520 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 TBC1D5Q92609 795 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 ALS2CR12Q96Q35 445 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 GSTA5Q7RTV2 222 aa11.11□□□□□ -0.63
COL4A6-202ENST00000372216 KDM5AP29375 1690 aaKnown RBP11.1□□□□□ -0.63
COL4A6-202ENST00000372216 CCDC129Q6ZRS4 1044 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 NOP9Q86U38 636 aaKnown RBP11.1□□□□□ -0.63
COL4A6-202ENST00000372216 PPM1EQ8WY54 764 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 DHX58Q96C10 678 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 FAM13AO94988 1023 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 RASA3Q14644 834 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 RUFY3Q7L099 469 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 USP37Q86T82 979 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 PRDM10Q9NQV6 1147 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 ZBTB40Q9NUA8 1239 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 A0A1W2PRG0 241 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 ERVV-2B6SEH9 535 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 PPP2R5CQ13362 524 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 FERMT1Q9BQL6 677 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 IKBKGQ9Y6K9 419 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 TRIM75PA6NK02 468 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 HOXB7P09629 217 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 NCBP1Q09161 790 aaKnown RBP11.1□□□□□ -0.63
COL4A6-202ENST00000372216 SUCLG2Q96I99 432 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 ARHGEF10LQ9HCE6 1279 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 RAD50Q92878 1312 aa11.1□□□□□ -0.63
COL4A6-202ENST00000372216 KIF2AO00139 706 aaPredicted RBP11.09□□□□□ -0.63
COL4A6-202ENST00000372216 UBXN4Q92575 508 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 AATFQ9NY61 560 aaKnown RBP eCLIP11.09□□□□□ -0.63
COL4A6-202ENST00000372216 GNA11P29992 359 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 AK2P54819 239 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 MXRA7P84157 204 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 KRT79Q5XKE5 535 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 PLEKHM2Q8IWE5 1019 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 IL27Q8NEV9 243 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 N4BP3O15049 544 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 ACTN2P35609 894 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 JADE2Q9NQC1 790 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 TMCO4Q5TGY1 634 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 DHX32Q7L7V1 743 aaKnown RBP11.09□□□□□ -0.63
COL4A6-202ENST00000372216 NIM1KQ8IY84 436 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 MRPS27Q92552 414 aaKnown RBP11.09□□□□□ -0.63
COL4A6-202ENST00000372216 RNF34Q969K3 372 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 ZWINTO95229 277 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 ALDH1B1P30837 517 aa11.09□□□□□ -0.63
COL4A6-202ENST00000372216 FSD2A1L4K1 749 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 SMIM23A6NLE4 172 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 CHMP2AO43633 222 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 CHMLP26374 656 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 GSDMDP57764 484 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 GIMAP6Q6P9H5 292 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 MAEAQ7L5Y9 396 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 HAUS7Q99871 368 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 BACH1O14867 736 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 CCDC172P0C7W6 258 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 PAFAH1B1P43034 410 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 WDR66Q8TBY9 1149 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 CLSTN2Q9H4D0 955 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 NPHP4O75161 1426 aaPredicted RBP11.08□□□□□ -0.64
COL4A6-202ENST00000372216 PTPDC1A2A3K4 754 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 GABPAQ06546 454 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 DBNDD2Q9BQY9 259 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 MROH5Q6ZUA9 1318 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 ARHGEF5Q12774 1597 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 CCDC66A2RUB6 948 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 DDX39AO00148 427 aaKnown RBP11.08□□□□□ -0.64
COL4A6-202ENST00000372216 F13A1P00488 732 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 ZNF165P49910 485 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 USP48Q86UV5 1035 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 ANO3Q9BYT9 981 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 EFCAB6Q5THR3 1501 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 PLEKHG3A1L390 1219 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 B4E1Z4 1266 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 KCNA4P22459 653 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 KDM5DQ9BY66 1539 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 ODF2LQ9ULJ1 636 aa11.08□□□□□ -0.64
COL4A6-202ENST00000372216 PTGS1P23219 599 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms