RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 PHKBQ93100 1093 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 MYL10Q9BUA6 226 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 WWC3Q9ULE0 1092 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 ANO10Q9NW15 660 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 RTEL1Q9NZ71 1219 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 FBXO3Q9UK99 471 aa20.29■□□□□ 0.84
COL9A1-201ENST00000320755 ADD2P35612 726 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 CCDC102BQ68D86 513 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 CYB5R4Q7L1T6 521 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 CHMP4CQ96CF2 233 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 SPTLC2O15270 562 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 ATL3Q6DD88 541 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 ADALQ6DHV7 355 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 PLA2G12BQ9BX93 195 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 NBPF3Q9H094 633 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 TNS2Q63HR2 1409 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 PARP4Q9UKK3 1724 aaKnown RBP20.28■□□□□ 0.84
COL9A1-201ENST00000320755 EVCP57679 992 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 GNL2Q13823 731 aaKnown RBP20.28■□□□□ 0.84
COL9A1-201ENST00000320755 MYSM1Q5VVJ2 828 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 NFXL1Q6ZNB6 911 aa20.28■□□□□ 0.84
COL9A1-201ENST00000320755 FMR1NBQ8N0W7 255 aaPredicted RBP20.28■□□□□ 0.84
COL9A1-201ENST00000320755 CEP57L1Q8IYX8 460 aa20.27■□□□□ 0.84
COL9A1-201ENST00000320755 ZNF592Q92610 1267 aa20.27■□□□□ 0.84
COL9A1-201ENST00000320755 PDE8BO95263 885 aa20.27■□□□□ 0.84
COL9A1-201ENST00000320755 TICAM2Q86XR7 235 aa20.27■□□□□ 0.84
COL9A1-201ENST00000320755 DHX40Q8IX18 779 aaKnown RBP20.27■□□□□ 0.84
COL9A1-201ENST00000320755 CAVIN2O95810 425 aa20.26■□□□□ 0.83
COL9A1-201ENST00000320755 METAP2P50579 478 aaKnown RBP eCLIP20.26■□□□□ 0.83
COL9A1-201ENST00000320755 TPD52L1Q16890 204 aaPredicted RBP20.26■□□□□ 0.83
COL9A1-201ENST00000320755 AIDAQ96BJ3 306 aa20.26■□□□□ 0.83
COL9A1-201ENST00000320755 MAP7D2Q96T17 732 aa20.26■□□□□ 0.83
COL9A1-201ENST00000320755 TOMM22Q9NS69 142 aa20.26■□□□□ 0.83
COL9A1-201ENST00000320755 RIC1Q4ADV7 1423 aa20.26■□□□□ 0.83
COL9A1-201ENST00000320755 CYP19A1P11511 503 aaPredicted RBP20.26■□□□□ 0.83
COL9A1-201ENST00000320755 PDE6AP16499 860 aa20.26■□□□□ 0.83
COL9A1-201ENST00000320755 DZIP3Q86Y13 1208 aaKnown RBP20.26■□□□□ 0.83
COL9A1-201ENST00000320755 ALG1Q9BT22 464 aa20.26■□□□□ 0.83
COL9A1-201ENST00000320755 ANGEL1Q9UNK9 670 aaKnown RBP20.26■□□□□ 0.83
COL9A1-201ENST00000320755 UBE2Q2LH0YL09 131 aa20.25■□□□□ 0.83
COL9A1-201ENST00000320755 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.25■□□□□ 0.83
COL9A1-201ENST00000320755 ZNF710Q8N1W2 664 aa20.25■□□□□ 0.83
COL9A1-201ENST00000320755 DPCR1Q3MIW9 517 aa20.25■□□□□ 0.83
COL9A1-201ENST00000320755 UBR2Q8IWV8 1755 aa20.25■□□□□ 0.83
COL9A1-201ENST00000320755 RRP12Q5JTH9 1297 aaKnown RBP20.25■□□□□ 0.83
COL9A1-201ENST00000320755 TNNT1P13805 278 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 CTDSPL2Q05D32 466 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 CCDC82Q8N4S0 544 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 KCNG4Q8TDN1 519 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 BCL2L12Q9HB09 334 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 CDC27P30260 824 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 KIF23Q02241 960 aaPredicted RBP20.24■□□□□ 0.83
COL9A1-201ENST00000320755 ANO1Q5XXA6 986 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 FBXL16Q8N461 479 aa20.24■□□□□ 0.83
COL9A1-201ENST00000320755 TTF1Q15361 905 aaPredicted RBP20.23■□□□□ 0.83
COL9A1-201ENST00000320755 MAGEB6Q8N7X4 407 aa20.23■□□□□ 0.83
COL9A1-201ENST00000320755 PDE8AO60658 829 aa20.23■□□□□ 0.83
COL9A1-201ENST00000320755 ZNF202O95125 648 aa20.23■□□□□ 0.83
COL9A1-201ENST00000320755 LRRC8AQ8IWT6 810 aa20.23■□□□□ 0.83
COL9A1-201ENST00000320755 VGLL2Q8N8G2 317 aa20.23■□□□□ 0.83
COL9A1-201ENST00000320755 NAT10Q9H0A0 1025 aaKnown RBP20.23■□□□□ 0.83
COL9A1-201ENST00000320755 TRMT1Q9NXH9 659 aaKnown RBP20.23■□□□□ 0.83
COL9A1-201ENST00000320755 SEC31BQ9NQW1 1179 aa20.23■□□□□ 0.83
COL9A1-201ENST00000320755 KIAA1468Q9P260 1216 aa20.23■□□□□ 0.83
COL9A1-201ENST00000320755 NWD2Q9ULI1 1742 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 SLC3A2P08195 630 aaKnown RBP20.22■□□□□ 0.83
COL9A1-201ENST00000320755 ZKSCAN3Q9BRR0 538 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 ARMT1Q9H993 441 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 POLR3EQ9NVU0 708 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 IQSEC3Q9UPP2 1182 aaPredicted RBP20.22■□□□□ 0.83
COL9A1-201ENST00000320755 NEDD4P46934 1319 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 UBN2Q6ZU65 1347 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 CDHR2Q9BYE9 1310 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 SKILP12757 684 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 TMEM67Q5HYA8 995 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 KRT40Q6A162 431 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 APOA5Q6Q788 366 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 BRAPQ7Z569 592 aa20.22■□□□□ 0.83
COL9A1-201ENST00000320755 WDHD1O75717 1129 aaPredicted RBP20.21■□□□□ 0.83
COL9A1-201ENST00000320755 MBD4O95243 580 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 SMC2O95347 1197 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 VPS37DQ86XT2 251 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 MPHOSPH8Q99549 860 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 A0A1W2PQ27 194 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 A0A1W2PQ64 194 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 A0A1W2PQD8 194 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 USP27XA6NNY8 438 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 YEATS4O95619 227 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 NAPBQ9H115 298 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 CCDC69A6NI79 296 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 EXOC5O00471 708 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 ZBTB43O43298 467 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 PFKFB1P16118 471 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 SARM1Q6SZW1 724 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 MRFAP1L1Q96HT8 127 aa20.21■□□□□ 0.83
COL9A1-201ENST00000320755 STRBPQ96SI9 672 aaKnown RBP20.21■□□□□ 0.83
COL9A1-201ENST00000320755 SH2B2O14492 632 aaPredicted RBP20.2■□□□□ 0.82
COL9A1-201ENST00000320755 PRKAB2O43741 272 aa20.2■□□□□ 0.82
COL9A1-201ENST00000320755 GTF2F1P35269 517 aaKnown RBP eCLIP20.2■□□□□ 0.82
COL9A1-201ENST00000320755 UBE3CQ15386 1083 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms