RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 H7C1D1 291 aa9.98□□□□□ -0.81
PDLIM5-201ENST00000317968 NOC3LQ8WTT2 800 aaKnown RBP9.98□□□□□ -0.81
PDLIM5-201ENST00000317968 TMX3Q96JJ7 454 aa9.98□□□□□ -0.81
PDLIM5-201ENST00000317968 COL18A1P39060 1754 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 ZAP70P43403 619 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 DPP8Q6V1X1 898 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 CTCFLQ8NI51 663 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 SCAND2PQ9GZW5 306 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 BIN2Q9UBW5 565 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 COL16A1Q07092 1604 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 ATRNO75882 1429 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 GPAA1O43292 621 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 ARHGAP27Q6ZUM4 889 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 TTC6Q86TZ1 520 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 LARGE2Q8N3Y3 721 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 SH2D4AQ9H788 454 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 PUS3Q9BZE2 481 aaKnown RBP9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 ZSCAN16Q9H4T2 348 aaPredicted RBP9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 NWD2Q9ULI1 1742 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 KDM3BQ7LBC6 1761 aa9.97□□□□□ -0.81
PDLIM5-201ENST00000317968 SEC24BO95487 1268 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 CCDC96Q2M329 555 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 ATG9AQ7Z3C6 839 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 CATIPQ7Z7H3 387 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 MAGEB6Q8N7X4 407 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 SCN11AQ9UI33 1791 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 IFIT3O14879 490 aaKnown RBP9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 SLC27A2O14975 620 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 PDE6AP16499 860 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 MCM4P33991 863 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 GIMAP6Q6P9H5 292 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 LRP10Q7Z4F1 713 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 SCLT1Q96NL6 688 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 BCS1LQ9Y276 419 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 SLC12A7Q9Y666 1083 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 BCL9LQ86UU0 1499 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 ATL3Q6DD88 541 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 OTUD7BQ6GQQ9 843 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 CCDC73Q6ZRK6 1079 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 MASTLQ96GX5 879 aa9.96□□□□□ -0.81
PDLIM5-201ENST00000317968 GOLGA6L3A6NEY3 463 aa9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 LSG1Q9H089 658 aaKnown RBP9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 SNX14Q9Y5W7 946 aa9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 PATL2C9JE40 543 aaKnown RBP9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 PRKCSHP14314 528 aaPredicted RBP9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 RPS6KB1P23443 525 aa9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 EPS15P42566 896 aa9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 KAZALD1Q96I82 304 aa9.96□□□□□ -0.82
PDLIM5-201ENST00000317968 ARID4AP29374 1257 aaPredicted RBP9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 NFIXQ14938 502 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 SALL3Q9BXA9 1300 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 SUGT1Q9Y2Z0 365 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 MINDY4BA8MYZ0 360 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 TAF5LO75529 589 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 MYCNP04198 464 aaPredicted RBP9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 TBC1D9BQ66K14 1250 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 SRP68Q9UHB9 627 aaKnown RBP9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 MBD4O95243 580 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 ATP8A2Q9NTI2 1148 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 ARPP21Q9UBL0 812 aaPredicted RBP9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 PDS5AQ29RF7 1337 aaKnown RBP9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 TMEM67Q5HYA8 995 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 VEZTQ9HBM0 779 aa9.95□□□□□ -0.82
PDLIM5-201ENST00000317968 WDR19Q8NEZ3 1342 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 ADD2P35612 726 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 FAM227BQ96M60 508 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 ZSWIM6Q9HCJ5 1215 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 PICK1Q9NRD5 415 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 ZNF532Q9HCE3 1301 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 WTAPQ15007 396 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 C2CD5Q86YS7 1000 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 CCDC12Q8WUD4 166 aaPredicted RBP9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 PCMTD1Q96MG8 357 aaPredicted RBP9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 COA1Q9GZY4 146 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 ALX1Q15699 326 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 TSGA10IPQ3SY00 556 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 BMP2KQ9NSY1 1161 aaPredicted RBP9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 PPEF1O14829 653 aaPredicted RBP9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 CCDC83Q8IWF9 413 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 SP8Q8IXZ3 490 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 ZNF609O15014 1411 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 DESP17661 470 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 PHKA1P46020 1223 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 TMOD4Q9NZQ9 345 aa9.94□□□□□ -0.82
PDLIM5-201ENST00000317968 GOLGA8BA8MQT2 603 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 PRC1O43663 620 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 NUP133Q8WUM0 1156 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 BRF1Q92994 677 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 VTI1AQ96AJ9 217 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 MINPP1Q9UNW1 487 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 GOLGA8AA7E2F4 631 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 ZBTB43O43298 467 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 ALDH8A1Q9H2A2 487 aaPredicted RBP9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 SEC31BQ9NQW1 1179 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 CEP131Q9UPN4 1083 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 KCPQ6ZWJ8 1503 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 BMP15O95972 392 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 RBM26Q5T8P6 1007 aaKnown RBP9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 ZNF710Q8N1W2 664 aa9.93□□□□□ -0.82
PDLIM5-201ENST00000317968 A0A0D9SFI3 127 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 260.5 ms