RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 DDX19AQ9NUU7 478 aaKnown RBP12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 BAIAP2L1Q9UHR4 511 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 TROQ12816 1431 aaPredicted RBP12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 CDR2Q01850 454 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 ORC6Q9Y5N6 252 aa12.52□□□□□ -0.41
HDGFL3-201ENST00000299633 PDE4DIPQ5VU43 2346 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 ANO6Q4KMQ2 910 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 EEF1DP29692 281 aaKnown RBP12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 THUMPD2Q9BTF0 503 aaKnown RBP12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 KRT3P12035 628 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 INF2Q27J81 1249 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 C16orf87Q6PH81 154 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 PPP4R1Q8TF05 950 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 KRT83P78385 493 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 ZNF530Q6P9A1 599 aaPredicted RBP12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 DIABLOQ9NR28 239 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 BTBD11A6QL63 1104 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 PPP1R1BQ9UD71 204 aaPredicted RBP12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 TMPOP42166 694 aaKnown RBP12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 PPARDQ03181 441 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 TNNC1P63316 161 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 CCDC102BQ68D86 513 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 RPGRIP1Q96KN7 1286 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 SNAPC4Q5SXM2 1469 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 E7EVH7 732 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 TCERG1LQ5VWI1 586 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 RMND1Q9NWS8 449 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 KRT86O43790 486 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 SYT1P21579 422 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 NRBF2Q96F24 287 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 UBE2HP62256 183 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 PPP2R3AQ06190 1150 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 NBPF3Q9H094 633 aa12.51□□□□□ -0.41
HDGFL3-201ENST00000299633 CCDC186Q7Z3E2 898 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 LRPPRCP42704 1394 aaKnown RBP12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 RIOK3O14730 519 aaKnown RBP12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 MX1P20591 662 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 CCDC122Q5T0U0 273 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 MYH2Q9UKX2 1941 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 RMDN2Q96LZ7 410 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 RBM42Q9BTD8 480 aaKnown RBP12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 EXOC1Q9NV70 894 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 GOLGA6BA6NDN3 693 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 ZNF280CQ8ND82 737 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 ATRXP46100 2492 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 PPP2R5AQ15172 486 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 FAM69CQ0P6D2 419 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 CUL5Q93034 780 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 TLDC2A0PJX2 215 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 DMTNQ08495 405 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 TTF1Q15361 905 aaPredicted RBP12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 GRAMD4Q6IC98 578 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 CNPY4Q8N129 248 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 NCOA1Q15788 1441 aa12.5□□□□□ -0.41
HDGFL3-201ENST00000299633 CREB3O43889 395 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 LRRC27Q9C0I9 530 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 TRIM8Q9BZR9 551 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 TFIP11Q9UBB9 837 aaKnown RBP12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 EPS15L1Q9UBC2 864 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 HSP90AA4PQ58FG1 418 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 ZKSCAN8Q15776 578 aaPredicted RBP12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 PRPF40BQ6NWY9 871 aaKnown RBP12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 EHMT1Q9H9B1 1298 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 EIF2AK4Q9P2K8 1649 aaKnown RBP12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 IFT20Q8IY31 132 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 GUCY1B3Q02153 619 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 DDX21Q9NR30 783 aaKnown RBP eCLIP12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 TBC1D9Q6ZT07 1266 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 UTP14AQ9BVJ6 771 aaKnown RBP12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 ELF2Q15723 593 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 SEL1L2Q5TEA6 688 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 COPG1Q9Y678 874 aaKnown RBP12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 SSH1Q8WYL5 1049 aa12.49□□□□□ -0.41
HDGFL3-201ENST00000299633 CCDC124Q96CT7 223 aaKnown RBP12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 FAM186BQ8IYM0 893 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 WDR70Q9NW82 654 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 MRC2Q9UBG0 1479 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 MYH13Q9UKX3 1938 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 HMGXB3Q12766 1538 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 CABP4P57796 275 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 MCM10Q7L590 875 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 ZNF318Q5VUA4 2279 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 A0A1B0GW55 424 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DUX4L2P0CJ85 424 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DUX4L3P0CJ86 424 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DUX4L4P0CJ87 422 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DUX4L5P0CJ88 424 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DUX4L6P0CJ89 424 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DUX4L7P0CJ90 424 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 ZNF287Q9HBT7 754 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DUX4Q9UBX2 424 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 ASXL3Q9C0F0 2248 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 RARSP54136 660 aaKnown RBP12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 DENND2CQ68D51 928 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 HNRNPCL2B2RXH8 293 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 HNRNPCL1O60812 293 aaKnown RBP12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 HAUS1Q96CS2 278 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 CSRNP2Q9H175 543 aa12.48□□□□□ -0.41
HDGFL3-201ENST00000299633 ADGBQ8N7X0 1667 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms