RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 KRT28Q7Z3Y7 464 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 SKA2Q8WVK7 121 aaPredicted RBP13.52□□□□□ -0.24
PCF11-201ENST00000298281 MRRFQ96E11 262 aaKnown RBP13.52□□□□□ -0.24
PCF11-201ENST00000298281 CPSF2Q9P2I0 782 aaKnown RBP13.52□□□□□ -0.24
PCF11-201ENST00000298281 ZNF569Q5MCW4 686 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 HS2ST1Q7LGA3 356 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 USHBP1Q8N6Y0 703 aa13.52□□□□□ -0.24
PCF11-201ENST00000298281 SMIM24O75264 130 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 RNF8O76064 485 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 ATP11AP98196 1134 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 MRPS27Q92552 414 aaKnown RBP13.52□□□□□ -0.25
PCF11-201ENST00000298281 ANO3Q9BYT9 981 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 RPS6KA2Q15349 733 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 ANKRD36BQ8N2N9 1353 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 TSTA3Q13630 321 aaPredicted RBP13.52□□□□□ -0.25
PCF11-201ENST00000298281 CPLX4Q7Z7G2 160 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 FAM200AQ8TCP9 573 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 SCAF11Q99590 1463 aaKnown RBP13.52□□□□□ -0.25
PCF11-201ENST00000298281 UNC13AQ9UPW8 1703 aa13.52□□□□□ -0.25
PCF11-201ENST00000298281 NLRP3Q96P20 1036 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 SUDS3Q9H7L9 328 aaPredicted RBP13.51□□□□□ -0.25
PCF11-201ENST00000298281 SPECC1L-ADORA2AF8WAN1 911 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 TXNDC9O14530 226 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 HAND2P61296 217 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 TOPBP1Q92547 1522 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 RTL9Q8NET4 1388 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 SPDYE2BA6NHP3 402 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 ALDH1L1O75891 902 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 ABL1P00519 1130 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 SPDYE6P0CI01 402 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 IL15P40933 162 aaPredicted RBP13.51□□□□□ -0.25
PCF11-201ENST00000298281 PARD3BQ8TEW8 1205 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 AK9Q5TCS8 1911 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 CFAP65Q6ZU64 1925 aaKnown RBP13.51□□□□□ -0.25
PCF11-201ENST00000298281 SPDYE3A6NKU9 549 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 MCMDC2Q4G0Z9 681 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 CASC4Q6P4E1 433 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 TTC30BQ8N4P2 665 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 CXorf38Q8TB03 319 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 SETDB2Q96T68 719 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 NYXQ9GZU5 481 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 CTAGE9A4FU28 777 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 HARSP12081 509 aaKnown RBP13.51□□□□□ -0.25
PCF11-201ENST00000298281 GINS2Q9Y248 185 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 EMILIN1Q9Y6C2 1016 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 PRXQ9BXM0 1461 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 INTS8Q75QN2 995 aaKnown RBP13.51□□□□□ -0.25
PCF11-201ENST00000298281 MYO10Q9HD67 2058 aa13.51□□□□□ -0.25
PCF11-201ENST00000298281 CYP7A1P22680 504 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 RIOK1Q9BRS2 568 aaKnown RBP13.5□□□□□ -0.25
PCF11-201ENST00000298281 NEDD9Q14511 834 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 RHPN1Q8TCX5 695 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 SNRKQ9NRH2 765 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 RALGAPBQ86X10 1494 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 PPP1R2P41236 205 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 ZNF804AQ7Z570 1209 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 SUFUQ9UMX1 484 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 TRIM75PA6NK02 468 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 HNRNPCL2B2RXH8 293 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 HNRNPCL1O60812 293 aaKnown RBP13.5□□□□□ -0.25
PCF11-201ENST00000298281 HDAC1Q13547 482 aaPredicted RBP13.5□□□□□ -0.25
PCF11-201ENST00000298281 CEP128Q6ZU80 1094 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 ARFGAP2Q8N6H7 521 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 HEATR3Q7Z4Q2 680 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 KRT222Q8N1A0 295 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 SMARCC2Q8TAQ2 1214 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 NAP1L4Q99733 375 aaKnown RBP13.5□□□□□ -0.25
PCF11-201ENST00000298281 MRPL46Q9H2W6 279 aaKnown RBP13.5□□□□□ -0.25
PCF11-201ENST00000298281 OLA1Q9NTK5 396 aaKnown RBP13.5□□□□□ -0.25
PCF11-201ENST00000298281 BACH1O14867 736 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 GNA11P29992 359 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 TSPYL2Q9H2G4 693 aaPredicted RBP13.5□□□□□ -0.25
PCF11-201ENST00000298281 IQGAP2Q13576 1575 aa13.5□□□□□ -0.25
PCF11-201ENST00000298281 ZEB2O60315 1214 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 PHLDB2Q86SQ0 1253 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 SYF2O95926 243 aaKnown RBP13.49□□□□□ -0.25
PCF11-201ENST00000298281 KRT79Q5XKE5 535 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 SPATA17Q96L03 361 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 XAB2Q9HCS7 855 aaKnown RBP13.49□□□□□ -0.25
PCF11-201ENST00000298281 ADGRL1O94910 1474 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 A0A1B0GUL7 405 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 CETN3O15182 167 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 STX10O60499 249 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 ASIC1P78348 528 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 BRF1Q92994 677 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 NAPAP54920 295 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 ARHGEF2Q92974 986 aaKnown RBP13.49□□□□□ -0.25
PCF11-201ENST00000298281 VCXQ9H320 206 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 PALM3A6NDB9 673 aaPredicted RBP13.49□□□□□ -0.25
PCF11-201ENST00000298281 MAN1A1P33908 653 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 PICALMQ13492 652 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 PPP1R12CQ9BZL4 782 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 ATP5J2-PTCD1G3V325 749 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 NUCB1Q02818 461 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 MICALL1Q8N3F8 863 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 TBC1D32Q96NH3 1257 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 SLC4A4Q9Y6R1 1079 aa13.49□□□□□ -0.25
PCF11-201ENST00000298281 OATP04181 439 aa13.48□□□□□ -0.25
PCF11-201ENST00000298281 PTPN23Q9H3S7 1636 aa13.48□□□□□ -0.25
PCF11-201ENST00000298281 CSPG5O95196 566 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms