RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 ZNF569Q5MCW4 686 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 RASIP1Q5U651 963 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 PRPF40BQ6NWY9 871 aaKnown RBP12.48□□□□□ -0.41
MSH6-201ENST00000234420 SLC26A6Q9BXS9 759 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 TTC21AQ8NDW8 1320 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 RPSAP08865 295 aaKnown RBP12.48□□□□□ -0.41
MSH6-201ENST00000234420 MX2P20592 715 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 PRPF38AQ8NAV1 312 aaKnown RBP12.48□□□□□ -0.41
MSH6-201ENST00000234420 RIPOR2Q9Y4F9 1068 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 SBNO2Q9Y2G9 1366 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 F6X3S4 739 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 HMGB2P26583 209 aaKnown RBP12.48□□□□□ -0.41
MSH6-201ENST00000234420 EVCP57679 992 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 VPS52Q8N1B4 723 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 CAPN7Q9Y6W3 813 aa12.48□□□□□ -0.41
MSH6-201ENST00000234420 UBE2HP62256 183 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 RSPH3Q86UC2 560 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 HOMEZQ8IX15 550 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 M0QZ92 97 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 ATP2A2P16615 1042 aaKnown RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 IFIT1BQ5T764 474 aaKnown RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 ARHGAP25P42331 645 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 FAM98CQ17RN3 349 aaKnown RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 IFNLR1Q8IU57 520 aaPredicted RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 TCP11L2Q8N4U5 519 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 GUCA1BQ9UMX6 200 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 GAS8O95995 478 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 GABPB1Q06547 395 aaPredicted RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 PNISRQ8TF01 805 aaKnown RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 SKA2Q8WVK7 121 aaPredicted RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 UAP1Q16222 522 aaPredicted RBP12.47□□□□□ -0.41
MSH6-201ENST00000234420 DDB1Q16531 1140 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 CCDC152Q4G0S7 254 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 CYP7A1P22680 504 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 PLCB3Q01970 1234 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 PLVAPQ9BX97 442 aa12.47□□□□□ -0.41
MSH6-201ENST00000234420 TMED1Q13445 227 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 ERCC6LQ2NKX8 1250 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 VSIG1Q86XK7 387 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 NKIRAS1Q9NYS0 192 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 U3KPZ7 1027 aaPredicted RBP12.46□□□□□ -0.41
MSH6-201ENST00000234420 CCDC172P0C7W6 258 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 NUDT16Q96DE0 195 aaKnown RBP12.46□□□□□ -0.41
MSH6-201ENST00000234420 GANCQ8TET4 914 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 KIFC2Q96AC6 838 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 CHMP6Q96FZ7 201 aa12.46□□□□□ -0.41
MSH6-201ENST00000234420 RRBP1Q9P2E9 1410 aaKnown RBP12.46□□□□□ -0.41
MSH6-201ENST00000234420 MSH6P52701 1360 aa12.46□□□□□ -0.42
MSH6-201ENST00000234420 ATP2A1O14983 1001 aa12.46□□□□□ -0.42
MSH6-201ENST00000234420 ZSCAN26Q16670 478 aa12.46□□□□□ -0.42
MSH6-201ENST00000234420 CABS1Q96KC9 395 aa12.46□□□□□ -0.42
MSH6-201ENST00000234420 LRRC23Q53EV4 343 aaPredicted RBP12.46□□□□□ -0.42
MSH6-201ENST00000234420 SESTD1Q86VW0 696 aa12.46□□□□□ -0.42
MSH6-201ENST00000234420 TNNI2P48788 182 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 USH1GQ495M9 461 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 SPDYE3A6NKU9 549 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 GJB2P29033 226 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 AFMP43652 599 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 ZNF804AQ7Z570 1209 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 SPAG5Q96R06 1193 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 ITM2BQ9Y287 266 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.45□□□□□ -0.423e-7■■■□□ 17.8
MSH6-201ENST00000234420 RAB11FIP3O75154 756 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 ANKRD24Q8TF21 1146 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 BAG1Q99933 345 aaPredicted RBP12.45□□□□□ -0.42
MSH6-201ENST00000234420 IMPG2Q9BZV3 1241 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 TCP11L1Q9NUJ3 509 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 MFSD6Q6ZSS7 791 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 CRNKL1Q9BZJ0 848 aaKnown RBP12.45□□□□□ -0.42
MSH6-201ENST00000234420 ANXA1P04083 346 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 FBXW4P57775 412 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 HELBQ8NG08 1087 aaPredicted RBP12.45□□□□□ -0.42
MSH6-201ENST00000234420 KLHDC4Q8TBB5 520 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.45□□□□□ -0.42
MSH6-201ENST00000234420 GPCPD1Q9NPB8 672 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 DPY19L2Q6NUT2 758 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 CPXCR1Q8N123 301 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 TRIM47Q96LD4 638 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 MED10Q9BTT4 135 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 RRAGDQ9NQL2 400 aaPredicted RBP12.45□□□□□ -0.42
MSH6-201ENST00000234420 AFG3L2Q9Y4W6 797 aa12.45□□□□□ -0.42
MSH6-201ENST00000234420 TAF7Q15545 349 aaPredicted RBP12.44□□□□□ -0.42
MSH6-201ENST00000234420 AOPEPQ8N6M6 819 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 MIGA1Q8NAN2 632 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.44□□□□□ -0.42
MSH6-201ENST00000234420 RPGRIP1LQ68CZ1 1315 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 SCAPERQ9BY12 1400 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 PRIM1P49642 420 aaKnown RBP12.44□□□□□ -0.42
MSH6-201ENST00000234420 TBC1D31Q96DN5 1066 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 AGTPBP1Q9UPW5 1226 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 NCKAP5LQ9HCH0 1330 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 MRPL46Q9H2W6 279 aaKnown RBP12.44□□□□□ -0.42
MSH6-201ENST00000234420 DDX21Q9NR30 783 aaKnown RBP eCLIP12.44□□□□□ -0.42
MSH6-201ENST00000234420 FYB2Q5VWT5 728 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 DUSP27Q5VZP5 1158 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 STXBP4Q6ZWJ1 553 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 LARGE2Q8N3Y3 721 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 CCDC169A6NNP5 214 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 SESN3P58005 492 aa12.44□□□□□ -0.42
MSH6-201ENST00000234420 TTF1Q15361 905 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms