RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 AK6Q9Y3D8 172 aaKnown RBP16.06■□□□□ 0.16
VPS53-216ENST00000574029 RANBP1P43487 201 aa16.05■□□□□ 0.16
VPS53-216ENST00000574029 SERPINB10P48595 397 aa16.05■□□□□ 0.16
VPS53-216ENST00000574029 SYNJ2BPP57105 145 aa16.05■□□□□ 0.16
VPS53-216ENST00000574029 HAGHQ16775 308 aa16.05■□□□□ 0.16
VPS53-216ENST00000574029 OR4A4PQ8NGN8 299 aa16.05■□□□□ 0.16
VPS53-216ENST00000574029 SIGLEC8Q9NYZ4 499 aa16.05■□□□□ 0.16
VPS53-216ENST00000574029 PEF1Q9UBV8 284 aaKnown RBP16.05■□□□□ 0.16
VPS53-216ENST00000574029 V9GY05 133 aa16.05■□□□□ 0.16
VPS53-216ENST00000574029 A0A087WXM4 84 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 CSN3P07498 182 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 DYRK1AQ13627 763 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 RAB11BQ15907 218 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 TSPAN14Q8NG11 270 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 USMG5Q96IX5 58 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 SDHAF2Q9NX18 166 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 ADAM30Q9UKF2 790 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 CSMD3Q7Z407 3707 aa16.04■□□□□ 0.16
VPS53-216ENST00000574029 SHISA3A0PJX4 238 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 PDCD5O14737 125 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 TRBV12-3P01733 135 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 DEFA5Q01523 94 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 MRGPRG-AS1Q2M3A8 158 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 TMEM177Q53S58 311 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 OR56B1Q8NGI3 324 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 HARBI1Q96MB7 349 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 OR2D2Q9H210 308 aa16.03■□□□□ 0.16
VPS53-216ENST00000574029 TXNL4BQ9NX01 149 aaKnown RBP16.03■□□□□ 0.16
VPS53-216ENST00000574029 LYSTQ99698 3801 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 DNAH1Q9P2D7 4330 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 SRRM4A7MD48 611 aaKnown RBP16.02■□□□□ 0.16
VPS53-216ENST00000574029 FABP7O15540 132 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 CD3GP09693 182 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 CLDN12P56749 244 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 TAGLNQ01995 201 aaKnown RBP16.02■□□□□ 0.16
VPS53-216ENST00000574029 NEDD8Q15843 81 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 TATDN3Q17R31 274 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 C2orf76Q3KRA6 126 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 C22orf42Q6IC83 251 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 LCN12Q6JVE5 192 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 ADAMTSL5Q6ZMM2 481 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 GTSCR1Q86UQ5 136 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 Q8N402 240 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 BVESQ8NE79 360 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 FAM3DQ96BQ1 224 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 C5orf30Q96GV9 206 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 CABLES2Q9BTV7 478 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 SSR3Q9UNL2 185 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 KCNK7Q9Y2U2 307 aa16.02■□□□□ 0.16
VPS53-216ENST00000574029 STARD9Q9P2P6 4700 aa16.02■□□□□ 0.15
VPS53-216ENST00000574029 SHOXO15266 292 aa16.01■□□□□ 0.15
VPS53-216ENST00000574029 MYL9P24844 172 aa16.01■□□□□ 0.15
VPS53-216ENST00000574029 MECP2P51608 486 aaKnown RBP16.01■□□□□ 0.15
VPS53-216ENST00000574029 IGSF11Q5DX21 431 aa16.01■□□□□ 0.15
VPS53-216ENST00000574029 COA4Q9NYJ1 87 aa16.01■□□□□ 0.15
VPS53-216ENST00000574029 TRBV6-7A0A0A0MS04 114 aa16■□□□□ 0.15
VPS53-216ENST00000574029 IZUMO1RA6ND01 250 aa16■□□□□ 0.15
VPS53-216ENST00000574029 BET1O15155 118 aa16■□□□□ 0.15
VPS53-216ENST00000574029 RBMXL2O75526 392 aaKnown RBP16■□□□□ 0.15
VPS53-216ENST00000574029 OR2A4O95047 310 aa16■□□□□ 0.15
VPS53-216ENST00000574029 DIRAS3O95661 229 aa16■□□□□ 0.15
VPS53-216ENST00000574029 IFNA6P05013 189 aa16■□□□□ 0.15
VPS53-216ENST00000574029 GSTT2P0CG29 244 aa16■□□□□ 0.15
VPS53-216ENST00000574029 GSTT2BP0CG30 244 aa16■□□□□ 0.15
VPS53-216ENST00000574029 RAB3BP20337 219 aa16■□□□□ 0.15
VPS53-216ENST00000574029 CBX3Q13185 183 aa16■□□□□ 0.15
VPS53-216ENST00000574029 RPEL1Q2QD12 228 aa16■□□□□ 0.15
VPS53-216ENST00000574029 ADAD2Q8NCV1 583 aaKnown RBP16■□□□□ 0.15
VPS53-216ENST00000574029 OR10J5Q8NHC4 309 aa16■□□□□ 0.15
VPS53-216ENST00000574029 TUBA4BQ9H853 241 aa16■□□□□ 0.15
VPS53-216ENST00000574029 MSGN1A6NI15 193 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 IFITM5A6NNB3 132 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 FCGR3AP08637 254 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 RRASP10301 218 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 CD36P16671 472 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 PLA2G7Q13093 441 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 RTL8BQ17RB0 113 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 LINC00322Q6ZN03 302 aaPredicted RBP15.99■□□□□ 0.15
VPS53-216ENST00000574029 TPRA1Q86W33 373 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 TEX45Q8NA69 505 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 OR2K2Q8NGT1 345 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 SNAPC3Q92966 411 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 PHB2Q99623 299 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 OR51E2Q9H255 320 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 VCX3AQ9NNX9 186 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 BIRC6Q9NR09 4857 aa15.99■□□□□ 0.15
VPS53-216ENST00000574029 EPPK1P58107 5090 aaKnown RBP15.98■□□□□ 0.15
VPS53-216ENST00000574029 TMEM272A0A1B0GTI8 110 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 OR9G9P0C7N8 305 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 APELAP0DMC3 54 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 OR10A3P58181 314 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 UBE2KP61086 200 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 MRPS15P82914 257 aaKnown RBP15.98■□□□□ 0.15
VPS53-216ENST00000574029 DDB2Q92466 427 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 RAB3CQ96E17 227 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 PEMTQ9UBM1 199 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 RAB22AQ9UL26 194 aa15.98■□□□□ 0.15
VPS53-216ENST00000574029 GADD45AP24522 165 aa15.97■□□□□ 0.15
VPS53-216ENST00000574029 PRSS8Q16651 343 aa15.97■□□□□ 0.15
VPS53-216ENST00000574029 VMA21Q3ZAQ7 101 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms