RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 HSPB1P04792 205 aaKnown RBP8.33□□□□□ -1.08
VPS39-208ENST00000564994 CLEC2LP0C7M8 214 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 DTYMKP23919 212 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 HACD4Q5VWC8 232 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 ACSM6Q6P461 480 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 SFXN4Q6P4A7 337 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 ZNF773Q6PK81 442 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 ZNF429Q86V71 674 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 POC5Q8NA72 575 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 LGALS14Q8TCE9 139 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 NUDCD2Q8WVJ2 157 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 FCGR1BQ92637 280 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 YTHDF1Q9BYJ9 559 aaKnown RBP8.33□□□□□ -1.08
VPS39-208ENST00000564994 SLA2Q9H6Q3 261 aa8.33□□□□□ -1.08
VPS39-208ENST00000564994 RRP15Q9Y3B9 282 aaKnown RBP8.33□□□□□ -1.08
VPS39-208ENST00000564994 RBM7Q9Y580 266 aaKnown RBP8.33□□□□□ -1.08
VPS39-208ENST00000564994 TMEM235A6NFC5 223 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 SHOXO15266 292 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 SSX5O60225 188 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 SAP30O75446 220 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 CNIH1O95406 144 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 IGLV2-14P01704 120 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 SPNP16150 400 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 NFYAP23511 347 aaPredicted RBP8.32□□□□□ -1.08
VPS39-208ENST00000564994 SDC2P34741 201 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 DEFA5Q01523 94 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 TAGLNQ01995 201 aaKnown RBP8.32□□□□□ -1.08
VPS39-208ENST00000564994 MXD1Q05195 221 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 ARL6IP1Q15041 203 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 RTL8BQ17RB0 113 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 IDO2Q6ZQW0 420 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 TPRA1Q86W33 373 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 ASCL2Q99929 193 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 ST6GALNAC5Q9BVH7 336 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 Q9H521 79 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 ZNF355PQ9NSJ1 428 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 SSR3Q9UNL2 185 aa8.32□□□□□ -1.08
VPS39-208ENST00000564994 IGKV1D-13A0A0B4J2D9 117 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 H3BUA1 57 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 RBMXL2O75526 392 aaKnown RBP8.31□□□□□ -1.08
VPS39-208ENST00000564994 LY86O95711 162 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 CRYZL1O95825 349 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 HLA-DQB1P01920 261 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 NHLRC4P0CG21 123 aaPredicted RBP8.31□□□□□ -1.08
VPS39-208ENST00000564994 APELAP0DMC3 54 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 IGKV1-13P0DP09 117 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 RRASP10301 218 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 CD40LGP29965 261 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 UBE2KP61086 200 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 RPL30P62888 115 aaKnown RBP8.31□□□□□ -1.08
VPS39-208ENST00000564994 PRSS8Q16651 343 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 HAPLN4Q86UW8 402 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 ZNF645Q8N7E2 425 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 OR5H6Q8NGV6 325 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 SLC25A38Q96DW6 304 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 ADTRPQ96IZ2 230 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 WWC2-AS2Q96NR7 200 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 CENPOQ9BU64 300 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 DCSTAMPQ9H295 470 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 RHBDL2Q9NX52 303 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 OR2W1Q9Y3N9 320 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 DNAH7Q8WXX0 4024 aa8.31□□□□□ -1.08
VPS39-208ENST00000564994 ANKRD34BA5PLL1 514 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 MSGN1A6NI15 193 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 BRI3O95415 125 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 GNG2P59768 71 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 PITPNAQ00169 270 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 CBX3Q13185 183 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 EIF4EBP1Q13541 118 aaPredicted RBP8.3□□□□□ -1.08
VPS39-208ENST00000564994 DYRK1AQ13627 763 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 CNIH2Q6PI25 160 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 TEX45Q8NA69 505 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 TINAGL1Q9GZM7 467 aaPredicted RBP8.3□□□□□ -1.08
VPS39-208ENST00000564994 ANXA10Q9UJ72 324 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 SMAD5-AS1Q9Y6J3 95 aa8.3□□□□□ -1.08
VPS39-208ENST00000564994 LOC100506127A0A0U1RQW1 187 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 C13orf42A0A1B0GVH6 325 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 TRIM64CA6NLI5 447 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 FCGR3BO75015 233 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 TUSC2O75896 110 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 SCGNO76038 276 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 TRBV12-3P01733 135 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 CTXN2P0C2S0 81 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 SAA1P0DJI8 122 aaPredicted RBP8.29□□□□□ -1.08
VPS39-208ENST00000564994 PTHLHP12272 177 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 GP9P14770 177 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 CD36P16671 472 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 BRWD1-AS2P59051 145 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 NEDD8Q15843 81 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 TNXAQ16473 311 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 VMA21Q3ZAQ7 101 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 OR2B11Q5JQS5 317 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 C10orf55Q5SWW7 151 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 IDNKQ5T6J7 187 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 KCTD9Q7L273 389 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 ADAD2Q8NCV1 583 aaKnown RBP8.29□□□□□ -1.08
VPS39-208ENST00000564994 OSR1Q8TAX0 266 aaPredicted RBP8.29□□□□□ -1.08
VPS39-208ENST00000564994 SRSF12Q8WXF0 261 aaKnown RBP8.29□□□□□ -1.08
VPS39-208ENST00000564994 TMEM68Q96MH6 324 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 GPHA2Q96T91 129 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms