RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MRGPRFQ96AM1 343 aa11.96□□□□□ -0.49
NUP54-213ENST00000513352 ZNF486Q96H40 463 aaPredicted RBP11.96□□□□□ -0.49
NUP54-213ENST00000513352 HARBI1Q96MB7 349 aa11.96□□□□□ -0.49
NUP54-213ENST00000513352 SCGB3A2Q96PL1 93 aa11.96□□□□□ -0.49
NUP54-213ENST00000513352 LIN7CQ9NUP9 197 aaKnown RBP11.96□□□□□ -0.49
NUP54-213ENST00000513352 KIAA1456Q9P272 454 aa11.96□□□□□ -0.49
NUP54-213ENST00000513352 TEX13DA0A0J9YY54 714 aaPredicted RBP11.95□□□□□ -0.5
NUP54-213ENST00000513352 SHOXO15266 292 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 PLA2G10O15496 165 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 CNTFRP26992 372 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 EBI3Q14213 229 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 RBMS2Q15434 407 aaKnown RBP11.95□□□□□ -0.5
NUP54-213ENST00000513352 C9orf152Q5JTZ5 239 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 MZT2BQ6NZ67 158 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 TMED4Q7Z7H5 227 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 OR4C13Q8NGP0 309 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 TSNAXQ99598 290 aaKnown RBP11.95□□□□□ -0.5
NUP54-213ENST00000513352 NPFFR1Q9GZQ6 430 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 C1RLQ9NZP8 487 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 VSIG4Q9Y279 399 aa11.95□□□□□ -0.5
NUP54-213ENST00000513352 NF1P21359 2839 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 MPPED1O15442 326 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 NBR2O15453 112 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 F2RL1P55085 397 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 RIPPLY3P57055 190 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 RND3P61587 244 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 Q8N6K4 173 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 TAF15Q92804 592 aaKnown RBP eCLIP11.94□□□□□ -0.5
NUP54-213ENST00000513352 RITA1Q96K30 269 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 RASL11BQ9BPW5 248 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 SLC25A21Q9BQT8 299 aaPredicted RBP11.94□□□□□ -0.5
NUP54-213ENST00000513352 TBC1D24Q9ULP9 559 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 GPR132Q9UNW8 380 aa11.94□□□□□ -0.5
NUP54-213ENST00000513352 SH2D7A6NKC9 451 aaPredicted RBP11.93□□□□□ -0.5
NUP54-213ENST00000513352 M0QZK8 103 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 AKR1C4P17516 323 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 F2RP25116 425 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 BTCP35070 178 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 DEFA1P59665 94 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 DEFA3P59666 94 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 ASAH1Q13510 395 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.93□□□□□ -0.5
NUP54-213ENST00000513352 C5orf56Q8N8D9 126 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 ADAD2Q8NCV1 583 aaKnown RBP11.93□□□□□ -0.5
NUP54-213ENST00000513352 OR8H1Q8NGG4 311 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 CD300LFQ8TDQ1 290 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 RTBDNQ9BSG5 229 aaPredicted RBP11.93□□□□□ -0.5
NUP54-213ENST00000513352 C5orf66Q9H5L9 145 aa11.93□□□□□ -0.5
NUP54-213ENST00000513352 METTL1Q9UBP6 276 aaKnown RBP11.93□□□□□ -0.5
NUP54-213ENST00000513352 C3orf85A0A1B0GTC6 90 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 RRHO14718 337 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 SLC25A17O43808 307 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 RAMP3O60896 148 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 S1PR2O95136 353 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 NDUFB6O95139 128 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 SERPINE2P07093 398 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 RPL15P61313 204 aaKnown RBP11.92□□□□□ -0.5
NUP54-213ENST00000513352 IFITM3Q01628 133 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 VMA21Q3ZAQ7 101 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 TMEM177Q53S58 311 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 Q8N9W7 124 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 OSR1Q8TAX0 266 aaPredicted RBP11.92□□□□□ -0.5
NUP54-213ENST00000513352 ZFAND2BQ8WV99 257 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 CLCC1Q96S66 551 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 RNF5Q99942 180 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 PRSS22Q9GZN4 317 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 FBXL15Q9H469 300 aa11.92□□□□□ -0.5
NUP54-213ENST00000513352 FAM240BA0A1B0GVZ2 78 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 FGF16O43320 207 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 SPDEFO95238 335 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 RPA2P15927 270 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 LPAR6P43657 344 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 LGALS7P47929 136 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 RAG2P55895 527 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 ERVK-16P61578 105 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 PSG5Q15238 335 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 KRTAP24-1Q3LI83 254 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 SP6Q3SY56 376 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 SSX9Q7RTT3 188 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 SGPP2Q8IWX5 399 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 CENPSQ8N2Z9 138 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 ENKURQ8TC29 256 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 TP53RKQ96S44 253 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 NAA60Q9H7X0 242 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 PLSCR3Q9NRY6 295 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 FLVCR2Q9UPI3 526 aa11.91□□□□□ -0.5
NUP54-213ENST00000513352 CRYM-AS1A6NIL9 109 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 H0Y980 276 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 ARPC1BO15143 372 aaKnown RBP11.9□□□□□ -0.5
NUP54-213ENST00000513352 RBFOX2O43251 390 aaKnown RBP eCLIP11.9□□□□□ -0.5
NUP54-213ENST00000513352 NDUFA3O95167 84 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 HPRT1P00492 218 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 HRASP01112 189 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 BRWD1-AS2P59051 145 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 TAS2R31P59538 309 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 BLCAPP62952 87 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 C5orf64Q2M2E5 130 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 TRIM16LQ309B1 348 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 C11orf88Q6PI97 169 aa11.9□□□□□ -0.5
NUP54-213ENST00000513352 Q6ZSV7 163 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms