RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SERPINB10P48595 397 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 TMEM50BP56557 158 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 OR10A3P58181 314 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 KIR2DS1Q14954 304 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 PLGLAQ15195 96 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 PLAC9Q5JTB6 97 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 OR4A4PQ8NGN8 299 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 OR5M8Q8NGP6 311 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 LINC00476Q8WZB0 136 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 FCGR1BQ92637 280 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 PTX4Q96A99 478 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB3CQ96E17 227 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 ABHD14BQ96IU4 210 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 RITA1Q96K30 269 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 DUX3Q96PT4 197 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 RNF5Q99942 180 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 AGMATQ9BSE5 352 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 PARP12Q9H0J9 701 aaKnown RBP5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 C11orf54Q9H0W9 315 aaPredicted RBP5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 ZMAT4Q9H898 229 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 PARP11Q9NR21 331 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF221Q9UK13 617 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 WASHC3Q9Y3C0 194 aa5.3□□□□□ -1.56
CCDC88A-213ENST00000476903 TRAV41A0A0B4J266 112 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 METTL21EPA6NDL7 271 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 G3V318 75 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 K7EIL1 84 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 RRHO14718 337 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 SCAF4O95104 1147 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 DIRAS3O95661 229 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 FCGR3AP08637 254 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 GNB3P16520 340 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 PPIFP30405 207 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 FOXI1Q12951 378 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 PLA2G7Q13093 441 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 DCTN2Q13561 401 aaKnown RBP5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 DEFB136Q30KP8 78 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 UBE2UQ5VVX9 321 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF660Q6AZW8 331 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 C22orf42Q6IC83 251 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 GLDNQ6ZMI3 551 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 PDPNQ86YL7 162 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 TCTEX1D1Q8N7M0 179 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 MINDY2Q8NBR6 621 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 OR10R2Q8NGX6 335 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 OR10J5Q8NHC4 309 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 MYOZ3Q8TDC0 251 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 UBE2E2Q96LR5 201 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 FBXL15Q9H469 300 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 RDH8Q9NYR8 311 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 VSIG4Q9Y279 399 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 KCNK7Q9Y2U2 307 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 WSB1Q9Y6I7 421 aa5.29□□□□□ -1.56
CCDC88A-213ENST00000476903 A0A075B6Q4 140 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 IGKV1-6A0A0C4DH72 117 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 A0A1W2PN81 502 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 WI2-2373I1.2A0A1W2PRP0 233 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 M0R1X1 148 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB27BO00194 218 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 MFNGO00587 321 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 BET1O15155 118 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 FABP7O15540 132 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 RAMP3O60896 148 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 SPDEFO95238 335 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 APOA2P02652 100 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 TFAP2AP05549 437 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 OR8U8P0C7N1 319 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 HIST1H1DP16402 221 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 PSMB9P28065 219 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 FGF9P31371 208 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 CHRNA7P36544 502 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 TALDO1P37837 337 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 RAB9AP51151 201 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 CRIP2P52943 208 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 RPS16P62249 146 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 CX3CL1P78423 397 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 NDPQ00604 133 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 RUNX1Q01196 453 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 RELQ04864 619 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 TMEM267Q0VDI3 215 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 FHL3Q13643 280 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 ARFRP1Q13795 201 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 ARL6IP1Q15041 203 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 SRSF7Q16629 238 aaKnown RBP eCLIP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 ECSCRQ19T08 205 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 MOGAT2Q3SYC2 334 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 DEFB121Q5J5C9 76 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 C9orf66Q5T8R8 295 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 PYHIN1Q6K0P9 492 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 TPRA1Q86W33 373 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 SPARTQ8N0X7 666 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF491Q8N8L2 437 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 ZNF383Q8NA42 475 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 OR11H1Q8NG94 326 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 ABHD5Q8WTS1 349 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 TSNAXQ99598 290 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 GINS4Q9BRT9 223 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 CABLES2Q9BTV7 478 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 YTHDF1Q9BYJ9 559 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms