RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 F12P00748 615 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-207ENST00000436724 ID3Q02535 119 aa17.35■□□□□ 0.37
PTPRF-207ENST00000436724 LSM10Q969L4 123 aaKnown RBP17.35■□□□□ 0.37
PTPRF-207ENST00000436724 SAA2-SAA4A0A096LPE2 208 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 A0A1B0GU03 582 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 NDUFS7O75251 213 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 SAA2P0DJI9 122 aaPredicted RBP17.34■□□□□ 0.37
PTPRF-207ENST00000436724 DAOP14920 347 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 ODF3L1Q8IXM7 274 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 LYG1Q8N1E2 194 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 SEC11CQ9BY50 192 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 ZFP57Q9NU63 452 aa17.34■□□□□ 0.37
PTPRF-207ENST00000436724 H2AFB1P0C5Y9 115 aa17.33■□□□□ 0.37
PTPRF-207ENST00000436724 ARV1Q9H2C2 271 aa17.33■□□□□ 0.37
PTPRF-207ENST00000436724 C11orf1Q9H5F2 150 aa17.33■□□□□ 0.37
PTPRF-207ENST00000436724 WFDC1Q9HC57 220 aa17.33■□□□□ 0.37
PTPRF-207ENST00000436724 TMEM50AO95807 157 aa17.33■□□□□ 0.36
PTPRF-207ENST00000436724 RAB7AP51149 207 aa17.33■□□□□ 0.36
PTPRF-207ENST00000436724 TMEM88Q6PEY1 159 aa17.33■□□□□ 0.36
PTPRF-207ENST00000436724 HEPN1Q6WQI6 88 aa17.33■□□□□ 0.36
PTPRF-207ENST00000436724 UBAC2Q8NBM4 344 aa17.33■□□□□ 0.36
PTPRF-207ENST00000436724 A6NNC1 897 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 KIAA1324LA8MWY0 1029 aaPredicted RBP17.32■□□□□ 0.36
PTPRF-207ENST00000436724 RNASEK-C17orf49H0YIS7 233 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 ITGB1BP1O14713 200 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 FCGR3BO75015 233 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 ZNF841Q6ZN19 808 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 ZNF251Q9BRH9 671 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 AIFM2Q9BRQ8 373 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 PARP11Q9NR21 331 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 PIGBOS1A0A0B4J2F0 54 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 PPIHO43447 177 aaKnown RBP17.32■□□□□ 0.36
PTPRF-207ENST00000436724 ZNF843Q8N446 348 aa17.32■□□□□ 0.36
PTPRF-207ENST00000436724 FAM24AA6NFZ4 105 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 CHST1O43916 411 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 CD5P06127 495 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 SLC25A6P12236 298 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 P2RY1P47900 373 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 NPBWR1P48145 328 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 NHLH2Q02577 135 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 DHRS7BQ6IAN0 325 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-207ENST00000436724 SLC25A48Q6ZT89 311 aaKnown RBP17.31■□□□□ 0.36
PTPRF-207ENST00000436724 FAM216AQ8WUB2 273 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 NEU4Q8WWR8 484 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-207ENST00000436724 MMP24Q9Y5R2 645 aa17.31■□□□□ 0.36
PTPRF-207ENST00000436724 RAB29O14966 203 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 GPR137BO60478 399 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 MRPS11P82912 194 aaKnown RBP17.3■□□□□ 0.36
PTPRF-207ENST00000436724 LYPD6BQ8NI32 183 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 PRELID1Q9Y255 219 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 C9JQL5 133 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 C1QL1O75973 258 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 DLX6P56179 175 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 TMEM155Q4W5P6 130 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 GPR157Q5UAW9 335 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 Q6ZRG5 221 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 CBLN2Q8IUK8 224 aa17.3■□□□□ 0.36
PTPRF-207ENST00000436724 CRYBG3Q68DQ2 2970 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 WRBO00258 174 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 AGPAT2O15120 278 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 P0C879 139 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 OR2C3Q8N628 320 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 TCTEX1D1Q8N7M0 179 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 SNAPINO95295 136 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 FSTL3O95633 263 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 PAX9P55771 341 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 DLX1P56177 255 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 TMEM30BQ3MIR4 351 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 ZNF295-AS1Q8N0V1 137 aa17.29■□□□□ 0.36
PTPRF-207ENST00000436724 IGSF23A1L1A6 192 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 MARCH11A6NNE9 402 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 H3BP45 60 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 PVALBP20472 110 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-207ENST00000436724 F2RL1P55085 397 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 VAMP2P63027 116 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 VKORC1L1Q8N0U8 176 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 C11orf42Q8N5U0 333 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 OR10A7Q8NGE5 316 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 DDB2Q92466 427 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 FAM212BQ9NTI7 297 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-207ENST00000436724 GAB2Q9UQC2 676 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 FAM157AC9JC47 383 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 PRB3Q04118 309 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-207ENST00000436724 SSX9Q7RTT3 188 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 S1PR3Q99500 378 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 GINS3Q9BRX5 216 aa17.28■□□□□ 0.36
PTPRF-207ENST00000436724 LYRM2Q9NU23 88 aaPredicted RBP17.28■□□□□ 0.36
PTPRF-207ENST00000436724 TSPAN9O75954 239 aa17.27■□□□□ 0.36
PTPRF-207ENST00000436724 EWSR1Q01844 656 aaKnown RBP eCLIP17.27■□□□□ 0.366e-7■■■■□ 25.8
PTPRF-207ENST00000436724 ZNF383Q8NA42 475 aa17.27■□□□□ 0.36
PTPRF-207ENST00000436724 CD300LFQ8TDQ1 290 aa17.27■□□□□ 0.36
PTPRF-207ENST00000436724 RAB1CQ92928 201 aa17.27■□□□□ 0.36
PTPRF-207ENST00000436724 R3HDM4Q96D70 268 aa17.27■□□□□ 0.36
PTPRF-207ENST00000436724 TIMD4Q96H15 378 aa17.27■□□□□ 0.36
PTPRF-207ENST00000436724 ARHGAP32A7KAX9 2087 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 SFTA3P0C7M3 94 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 SEC11BP0C7V7 166 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 IAPPP10997 89 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 MIDNQ504T8 468 aa17.26■□□□□ 0.35
PTPRF-207ENST00000436724 H2BFWTQ7Z2G1 175 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms