RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CMSS1Q9BQ75 279 aaKnown RBP13.14□□□□□ -0.31
CLN3-216ENST00000565316 TENM2Q9NT68 2774 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 SACSQ9NZJ4 4579 aa13.14□□□□□ -0.31
CLN3-216ENST00000565316 SLC25A17O43808 307 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 BRI3O95415 125 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 IGLV2-23P01705 113 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 APOA2P02652 100 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 TRGV3P03979 118 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 CRYGBP07316 175 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 C2orf76Q3KRA6 126 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 CASC10Q5T4H9 136 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 POC5Q8NA72 575 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 OR4A4PQ8NGN8 299 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 OR4C12Q96R67 309 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 ELOVL1Q9BW60 279 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 TPRKBQ9Y3C4 175 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 CSMD3Q7Z407 3707 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 M0R1X1 148 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 IGLV1-51P01701 117 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 HSMCR30P0CW71 290 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 RANBP1P43487 201 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 LGALS7P47929 136 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 SERPINB10P48595 397 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 CLDN12P56749 244 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 MLLT11Q13015 90 aaPredicted RBP13.13□□□□□ -0.31
CLN3-216ENST00000565316 Q8N1Y9 231 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 GRPEL2Q8TAA5 225 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 LYSTQ99698 3801 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 RANGRFQ9HD47 186 aaPredicted RBP13.13□□□□□ -0.31
CLN3-216ENST00000565316 STUB1Q9UNE7 303 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 KCNK7Q9Y2U2 307 aa13.13□□□□□ -0.31
CLN3-216ENST00000565316 DENRO43583 198 aaKnown RBP13.12□□□□□ -0.31
CLN3-216ENST00000565316 RGS10O43665 173 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 DIRAS3O95661 229 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 ZP3P21754 424 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 CALRP27797 417 aaKnown RBP13.12□□□□□ -0.31
CLN3-216ENST00000565316 PSMD7P51665 324 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 FABP5Q01469 135 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 PJVKQ0ZLH3 352 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 PLA2G7Q13093 441 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 MOGAT2Q3SYC2 334 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 TMEM68Q96MH6 324 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 CABLES2Q9BTV7 478 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 SLC35D1Q9NTN3 355 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 NKX1-2Q9UD57 310 aaPredicted RBP13.12□□□□□ -0.31
CLN3-216ENST00000565316 RAB22AQ9UL26 194 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 V9GY05 133 aa13.12□□□□□ -0.31
CLN3-216ENST00000565316 TRBV6-7A0A0A0MS04 114 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 A0A0G2JLM5 398 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 TMEM272A0A1B0GTI8 110 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 C13orf42A0A1B0GVH6 325 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 A8MZ25 164 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 FABP7O15540 132 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 AQP4P55087 323 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 TAGLNQ01995 201 aaKnown RBP13.11□□□□□ -0.31
CLN3-216ENST00000565316 KLF5Q13887 457 aaPredicted RBP13.11□□□□□ -0.31
CLN3-216ENST00000565316 OR5T1Q8NG75 326 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 TM2D3Q9BRN9 247 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 ZMAT4Q9H898 229 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 ACOT13Q9NPJ3 140 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 SDHAF2Q9NX18 166 aa13.11□□□□□ -0.31
CLN3-216ENST00000565316 CNIH1O95406 144 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 CD3GP09693 182 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 TMEM177Q53S58 311 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 IGSF11Q5DX21 431 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 IL34Q6ZMJ4 242 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 PRSS48Q7RTY5 328 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 HAPLN4Q86UW8 402 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 NRG4Q8WWG1 115 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 RAB3CQ96E17 227 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 C5orf30Q96GV9 206 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 MGLLQ99685 303 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 ZNF355PQ9NSJ1 428 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 C19orf73Q9NVV2 129 aa13.1□□□□□ -0.31
CLN3-216ENST00000565316 STARD9Q9P2P6 4700 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 SRRM4A7MD48 611 aaKnown RBP13.09□□□□□ -0.31
CLN3-216ENST00000565316 BET1O15155 118 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 FCGR3AP08637 254 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 GSTT2P0CG29 244 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 GSTT2BP0CG30 244 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 IGHV4-30-4P0DP06 118 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 CRHBPP24387 322 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 SRSF7Q16629 238 aaKnown RBP eCLIP13.09□□□□□ -0.31
CLN3-216ENST00000565316 MRGPRG-AS1Q2M3A8 158 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 ANKRD13BQ86YJ7 626 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 OR10J5Q8NHC4 309 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 CITED4Q96RK1 184 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 TINAGL1Q9GZM7 467 aaPredicted RBP13.09□□□□□ -0.31
CLN3-216ENST00000565316 OR2D2Q9H210 308 aa13.09□□□□□ -0.31
CLN3-216ENST00000565316 MRPS15P82914 257 aaKnown RBP13.08□□□□□ -0.32
CLN3-216ENST00000565316 HES5Q5TA89 166 aa13.08□□□□□ -0.32
CLN3-216ENST00000565316 ZNF343Q6P1L6 599 aa13.08□□□□□ -0.32
CLN3-216ENST00000565316 OR10R2Q8NGX6 335 aa13.08□□□□□ -0.32
CLN3-216ENST00000565316 HARBI1Q96MB7 349 aa13.08□□□□□ -0.32
CLN3-216ENST00000565316 DNAH1Q9P2D7 4330 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 TRAV1-2A0A0B4J238 106 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 ANKRD34BA5PLL1 514 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 RAB27BO00194 218 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 MFNGO00587 321 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 RRASP10301 218 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms