RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PPIAL4AQ9Y536 164 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 WNK1Q9H4A3 2382 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 FABP1P07148 127 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 SFTPCP11686 197 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 CRYGSP22914 178 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 CNN1P51911 297 aaKnown RBP13.84□□□□□ -0.19
CUX1-213ENST00000549414 FAM166AQ6J272 317 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 MYPOPQ86VE0 399 aaPredicted RBP13.84□□□□□ -0.19
CUX1-213ENST00000549414 TOLLIPQ9H0E2 274 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 IGKV1D-13A0A0B4J2D9 117 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 K7EQM0 130 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 OR4A8P0C604 315 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 IGKV1-13P0DP09 117 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 ZNF705AQ6ZN79 300 aaPredicted RBP13.84□□□□□ -0.19
CUX1-213ENST00000549414 MRPL30Q8TCC3 161 aaKnown RBP13.84□□□□□ -0.19
CUX1-213ENST00000549414 HSBP1L1C9JCN9 74 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 FBP1P09467 338 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 MMP9P14780 707 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 CTSSP25774 331 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 PSG5Q15238 335 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 SLC35E3Q7Z769 313 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 LDLRAD3Q86YD5 345 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 ZNF645Q8N7E2 425 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 FBLN5Q9UBX5 448 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 RAXQ9Y2V3 346 aa13.84□□□□□ -0.19
CUX1-213ENST00000549414 IGSF23A1L1A6 192 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 C12orf77C9JDV5 145 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 RAB5AP20339 215 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 UCP3P55916 312 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 FAM89BQ8N5H3 189 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 FLYWCH2Q96CP2 140 aaKnown RBP13.83□□□□□ -0.2
CUX1-213ENST00000549414 PCGF1Q9BSM1 259 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 RNF126Q9BV68 326 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 PNRC2Q9NPJ4 139 aaKnown RBP13.83□□□□□ -0.2
CUX1-213ENST00000549414 IGKV1-27A0A075B6S5 117 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 TCL1AP56279 114 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 UBE2L3P68036 154 aaKnown RBP13.83□□□□□ -0.2
CUX1-213ENST00000549414 ATRAIDQ6UW56 229 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 DHRS11Q6UWP2 260 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 CALYQ9NYX4 217 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 CISD1Q9NZ45 108 aaKnown RBP13.83□□□□□ -0.2
CUX1-213ENST00000549414 SLC45A2Q9UMX9 530 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 KIF26AQ9ULI4 1882 aaPredicted RBP13.83□□□□□ -0.2
CUX1-213ENST00000549414 LRRK1Q38SD2 2015 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 PIEZO2Q9H5I5 2752 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 RAB29O14966 203 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 CT45A10P0DMU9 189 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 SPNS3Q6ZMD2 512 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 FKBP11Q9NYL4 201 aa13.83□□□□□ -0.2
CUX1-213ENST00000549414 RALYQ9UKM9 306 aaKnown RBP13.83□□□□□ -0.2
CUX1-213ENST00000549414 LDLRAD4O15165 306 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 SRSF6Q13247 344 aaKnown RBP13.82□□□□□ -0.2
CUX1-213ENST00000549414 SMUG1Q53HV7 270 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 SPRR3Q9UBC9 169 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 MARCH11A6NNE9 402 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 CD1BP29016 333 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 CLCF1Q9UBD9 225 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 TRAPPC1Q9Y5R8 145 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 CTXND1A0A1B0GTU2 59 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 PQLC2LA1A4F0 135 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 HPRT1P00492 218 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 PRRX1P54821 245 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 GALNT14Q96FL9 552 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 SNX22Q96L94 193 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 GNG4P50150 75 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 RNF212Q495C1 297 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 LINC01560Q8TB33 94 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 AP1S3Q96PC3 154 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 INSIG2Q9Y5U4 225 aa13.82□□□□□ -0.2
CUX1-213ENST00000549414 E9PLN8 166 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 F8VVB4 439 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 F8VWA3 439 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 CSN1S1P47710 185 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 NAT8Q9UHE5 227 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 TUBD1Q9UJT1 453 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 SLC25A5P05141 298 aaKnown RBP13.81□□□□□ -0.2
CUX1-213ENST00000549414 K7N7A8 449 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 BCL2P10415 239 aa13.81□□□□□ -0.2
CUX1-213ENST00000549414 HOXB1P14653 301 aaPredicted RBP13.81□□□□□ -0.2
CUX1-213ENST00000549414 TAF15Q92804 592 aaKnown RBP eCLIP13.81□□□□□ -0.2
CUX1-213ENST00000549414 LY6G6EA0A0G2JKS1 128 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 A0A1W2PN81 502 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 LYZP61626 148 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 TNFRSF9Q07011 255 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 OR1B1Q8NGR6 318 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 VSTM2AQ8TAG5 236 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 PLPPR1Q8TBJ4 325 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 HEXA-AS1Q9H8Q6 139 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 OR51B2Q9Y5P1 312 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 U3KQA8 63 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 RND3P61587 244 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 PRNDQ9UKY0 176 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 TIMM9Q9Y5J7 89 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 CHEK1O14757 476 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 LY86O95711 162 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 RPL39P5Q59GN2 51 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 ABHD12Q8N2K0 398 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 TMEM18Q96B42 140 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 GAMTQ14353 236 aa13.8□□□□□ -0.2
CUX1-213ENST00000549414 Q56UQ5 140 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms