RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 IL15RAQ13261 267 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 FAM71F2Q6NXP2 309 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 HEXA-AS1Q9H8Q6 139 aa17.14■□□□□ 0.33
VPS28-208ENST00000527797 POLR3KQ9Y2Y1 108 aaPredicted RBP17.14■□□□□ 0.33
VPS28-208ENST00000527797 UTP20O75691 2785 aaKnown RBP17.13■□□□□ 0.33
VPS28-208ENST00000527797 FAM157AC9JC47 383 aa17.13■□□□□ 0.33
VPS28-208ENST00000527797 RBFOX2O43251 390 aaKnown RBP eCLIP17.13■□□□□ 0.334e-8■■■■□ 26.4
VPS28-208ENST00000527797 AKR1C2P52895 323 aa17.13■□□□□ 0.33
VPS28-208ENST00000527797 NMSQ5H8A3 153 aa17.13■□□□□ 0.33
VPS28-208ENST00000527797 THOC7Q6I9Y2 204 aaKnown RBP17.13■□□□□ 0.33
VPS28-208ENST00000527797 PNKDQ8N490 385 aa17.13■□□□□ 0.33
VPS28-208ENST00000527797 BEND2Q8NDZ0 799 aa17.13■□□□□ 0.33
VPS28-208ENST00000527797 DDB2Q92466 427 aa17.13■□□□□ 0.33
VPS28-208ENST00000527797 LSM10Q969L4 123 aaKnown RBP17.13■□□□□ 0.33
VPS28-208ENST00000527797 RRNAD1Q96FB5 475 aaKnown RBP17.13■□□□□ 0.33
VPS28-208ENST00000527797 SIRT7Q9NRC8 400 aa17.13■□□□□ 0.33
VPS28-208ENST00000527797 TRAV14DV4A0A0A6YYC5 116 aa17.12■□□□□ 0.33
VPS28-208ENST00000527797 S1PR2O95136 353 aa17.12■□□□□ 0.33
VPS28-208ENST00000527797 IGLV1-47P01700 117 aa17.12■□□□□ 0.33
VPS28-208ENST00000527797 ZNF137PP52743 207 aa17.12■□□□□ 0.33
VPS28-208ENST00000527797 HLA-DRB5Q30154 266 aa17.12■□□□□ 0.33
VPS28-208ENST00000527797 ZNF383Q8NA42 475 aa17.12■□□□□ 0.33
VPS28-208ENST00000527797 MMP26Q9NRE1 261 aa17.12■□□□□ 0.33
VPS28-208ENST00000527797 MPC2O95563 127 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 HPRT1P00492 218 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 CT45A6P0DMU7 189 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 CT45A5P0DMU8 189 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 CT45A7P0DMV0 189 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 PRB3Q04118 309 aaPredicted RBP17.11■□□□□ 0.33
VPS28-208ENST00000527797 C11orf87Q6NUJ2 197 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 GRPEL2Q8TAA5 225 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 THAP6Q8TBB0 222 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 ST6GALNAC6Q969X2 333 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 GPR146Q96CH1 333 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 PLEKHA2Q9HB19 425 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 AMMECR1Q9Y4X0 333 aaPredicted RBP17.11■□□□□ 0.33
VPS28-208ENST00000527797 DOCK11Q5JSL3 2073 aa17.11■□□□□ 0.33
VPS28-208ENST00000527797 FXYD6-FXYD2A0A087WZ82 144 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 IGKV1-5P01602 117 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 USF1P22415 310 aaPredicted RBP17.1■□□□□ 0.33
VPS28-208ENST00000527797 DVL1P1P54792 670 aaPredicted RBP17.1■□□□□ 0.33
VPS28-208ENST00000527797 VMO1Q7Z5L0 202 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 OR11H6Q8NGC7 330 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 OR4S2Q8NH73 311 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 MBD6Q96DN6 1003 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 SIRPDQ9H106 197 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 UNKLQ9H9P5 680 aaKnown RBP17.1■□□□□ 0.33
VPS28-208ENST00000527797 A0A1B0GU03 582 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 BUB1B-PAK6H3BSN5 160 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 KRASP01116 189 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 SLC25A4P12235 298 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 SLC25A6P12236 298 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 RAB32Q13637 225 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 FAM219AQ8IW50 185 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 MRPL20Q9BYC9 149 aaKnown RBP17.1■□□□□ 0.33
VPS28-208ENST00000527797 LPAR2Q9HBW0 351 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 MMP24Q9Y5R2 645 aa17.1■□□□□ 0.33
VPS28-208ENST00000527797 TENM4Q6N022 2769 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 A0A0G2JRQ6 117 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 SCGB1D2O95969 90 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 PET100P0DJ07 73 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 EPHA1P21709 976 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 G6PCP35575 357 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 S100A10P60903 97 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 TAGLNQ01995 201 aaKnown RBP17.09■□□□□ 0.33
VPS28-208ENST00000527797 TGIF2LXQ8IUE1 241 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 OR4D5Q8NGN0 318 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 ZFP57Q9NU63 452 aa17.09■□□□□ 0.33
VPS28-208ENST00000527797 HMSDA8MTL9 139 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 SNAPC5O75971 98 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 TOX4O94842 621 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 ARG1P05089 322 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 REG1BP48304 166 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 DIAPH2-AS1Q14236 149 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 SMCO1Q147U7 214 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 RTL8BQ17RB0 113 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 OR4P4Q8NGL7 312 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 SLC35D1Q9NTN3 355 aa17.08■□□□□ 0.32
VPS28-208ENST00000527797 APOA2P02652 100 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 RLN2P04090 185 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 RRASP10301 218 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 HCP5Q6MZN7 132 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 ZNF546Q86UE3 836 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 C9orf62Q8N4C0 152 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 OR1S1Q8NH92 325 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 R3HDM4Q96D70 268 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 NABP2Q9BQ15 211 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 PCGF1Q9BSM1 259 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 MBD2Q9UBB5 411 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 INSIG2Q9Y5U4 225 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 CRYZL1O95825 349 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 MBPP02686 304 aaPredicted RBP17.07■□□□□ 0.32
VPS28-208ENST00000527797 KLRD1Q13241 179 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 LAMTOR1Q6IAA8 161 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 DHRS7BQ6IAN0 325 aaPredicted RBP17.07■□□□□ 0.32
VPS28-208ENST00000527797 PRSS54Q6PEW0 395 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 TMEM65Q6PI78 240 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 H2BFWTQ7Z2G1 175 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 FOXRED2Q8IWF2 684 aa17.07■□□□□ 0.32
VPS28-208ENST00000527797 OR5AN1Q8NGI8 311 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms