RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 MRPL41Q8IXM3 137 aaKnown RBP9.08□□□□□ -0.96
SH3RF1-205ENST00000511421 KLHL30-AS1Q8NEE0 82 aa9.08□□□□□ -0.96
SH3RF1-205ENST00000511421 MYOZ3Q8TDC0 251 aa9.08□□□□□ -0.96
SH3RF1-205ENST00000511421 P2RX4Q99571 388 aa9.08□□□□□ -0.96
SH3RF1-205ENST00000511421 PARP11Q9NR21 331 aa9.08□□□□□ -0.96
SH3RF1-205ENST00000511421 FBXO7Q9Y3I1 522 aa9.08□□□□□ -0.96
SH3RF1-205ENST00000511421 TRAV18A0A075B6X5 111 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 A0A0A6YYH2 397 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 A6NJ64 397 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 IGLV1-40P01703 118 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 APOA2P02652 100 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 CTXN2P0C2S0 81 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 EGR2P11161 476 aaPredicted RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 MYCNOSP40205 109 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 CDX1P47902 265 aaPredicted RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 CRIP2P52943 208 aaPredicted RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 RPS16P62249 146 aaKnown RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 KIAA0141Q14154 515 aaPredicted RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 CNIH2Q6PI25 160 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 MINDY2Q8NBR6 621 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 TSNAXQ99598 290 aaKnown RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 SLC35D1Q9NTN3 355 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 TRAV41A0A0B4J266 112 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 SPDEFO95238 335 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 IGLV2-23P01705 113 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 PRB2P02812 416 aaPredicted RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 PLGLAQ15195 96 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 CROCCP3Q8IVE0 287 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 DDB2Q92466 427 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 FLYWCH2Q96CP2 140 aaKnown RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 RCC1LQ96I51 464 aaKnown RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 RAX2Q96IS3 184 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 KLK15Q9H2R5 256 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 AUNIPQ9H7T9 357 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 METTL1Q9UBP6 276 aaKnown RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 RBM7Q9Y580 266 aaKnown RBP9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 NUBP2Q9Y5Y2 271 aa9.07□□□□□ -0.96
SH3RF1-205ENST00000511421 HLA-DQB1P01920 261 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 SMIM18P0DKX4 95 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 NFYAP23511 347 aaPredicted RBP9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 DUTP33316 252 aaKnown RBP9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 TAGLNQ01995 201 aaKnown RBP9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 FOXB2Q5VYV0 432 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 OR13F1Q8NGS4 319 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 DUX3Q96PT4 197 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 FUNDC2Q9BWH2 189 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 DIABLOQ9NR28 239 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 TPSG1Q9NRR2 321 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 ANXA10Q9UJ72 324 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 OR2W1Q9Y3N9 320 aa9.06□□□□□ -0.96
SH3RF1-205ENST00000511421 TGP01266 2768 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 IGKV1D-13A0A0B4J2D9 117 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 SRRM4A7MD48 611 aaKnown RBP9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 LINC00473A8K010 186 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 J3QRK9 145 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 CCL24O00175 119 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 SLC25A17O43808 307 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 SOX15O60248 233 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 TUSC2O75896 110 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 IGLV2-14P01704 120 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 CRYGBP07316 175 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 IGKV1-13P0DP09 117 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 PTHLHP12272 177 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 LGALS7P47929 136 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 NCS1P62166 190 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 DEFB136Q30KP8 78 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 TMEM177Q53S58 311 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 ZNF562Q6V9R5 426 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 HOGA1Q86XE5 327 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 GVQW1Q8N7I0 195 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 ZNF491Q8N8L2 437 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 BVESQ8NE79 360 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 C4orf3Q8WVX3 66 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 CLCC1Q96S66 551 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 NECAP2Q9NVZ3 263 aa9.05□□□□□ -0.96
SH3RF1-205ENST00000511421 XRCC3O43542 346 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 DUS4LO95620 317 aaKnown RBP9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 CA2P00918 260 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 RAB9AP51151 201 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 LUMP51884 338 aaPredicted RBP9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 SSBP2P81877 361 aaPredicted RBP9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 ECSCRQ19T08 205 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 ZNF645Q8N7E2 425 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 TCTEX1D1Q8N7M0 179 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 BEST4Q8NFU0 473 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 SLC25A46Q96AG3 418 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 ADTRPQ96IZ2 230 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 UBE2E2Q96LR5 201 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 FAM103A1Q9BTL3 118 aaKnown RBP9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 GNB4Q9HAV0 340 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 ARPC1BO15143 372 aaKnown RBP9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 RRASP10301 218 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 VBP1P61758 197 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 PJVKQ0ZLH3 352 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 RTL8BQ17RB0 113 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 MRGPRG-AS1Q2M3A8 158 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 AKIRIN2Q53H80 203 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 UBE2NLQ5JXB2 153 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 TMEM65Q6PI78 240 aa9.04□□□□□ -0.96
SH3RF1-205ENST00000511421 REC114Q7Z4M0 266 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms