RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TMEM203Q969S6 136 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 ABHD14BQ96IU4 210 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 ADTRPQ96IZ2 230 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 RITA1Q96K30 269 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 OR5B12Q96R08 314 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 NICN1Q9BSH3 213 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 FBXL15Q9H469 300 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 DUSP21Q9H596 190 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 AK3Q9UIJ7 227 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 BLOC1S6Q9UL45 172 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 STUB1Q9UNE7 303 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 LSM2Q9Y333 95 aaKnown RBP5.48□□□□□ -1.53
VPS41-208ENST00000448833 NBEAL2Q6ZNJ1 2754 aa5.48□□□□□ -1.53
VPS41-208ENST00000448833 TRAV1-2A0A0B4J238 106 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 H0Y980 276 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 FCN1O00602 326 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 CREBL2O60519 120 aaPredicted RBP5.47□□□□□ -1.53
VPS41-208ENST00000448833 SLC22A5O76082 557 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 TRGV3P03979 118 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 SCTP09683 121 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 GALP22466 123 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 TALDO1P37837 337 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 HSPA13P48723 471 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 INSL4Q14641 139 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 IRF3Q14653 427 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 FXYD3Q14802 87 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 RTL8BQ17RB0 113 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 C2orf76Q3KRA6 126 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 PRSS48Q7RTY5 328 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 ANKRD13BQ86YJ7 626 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 LFNGQ8NES3 379 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 ARPC1AQ92747 370 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 FAM3DQ96BQ1 224 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 RAB3CQ96E17 227 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 ARHGAP5-AS1Q96IT6 56 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 USMG5Q96IX5 58 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 RHOVQ96L33 236 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 MGLLQ99685 303 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 PECRQ9BY49 303 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 CCDC90BQ9GZT6 254 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 ZNF355PQ9NSJ1 428 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 SLC35D1Q9NTN3 355 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 RDH8Q9NYR8 311 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 AK6Q9Y3D8 172 aaKnown RBP5.47□□□□□ -1.53
VPS41-208ENST00000448833 RBM7Q9Y580 266 aaKnown RBP5.47□□□□□ -1.53
VPS41-208ENST00000448833 A3GALT2U3KPV4 340 aa5.47□□□□□ -1.53
VPS41-208ENST00000448833 FOXI3A8MTJ6 420 aaPredicted RBP5.46□□□□□ -1.54
VPS41-208ENST00000448833 M0R1X1 148 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 SHOXO15266 292 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 FABP7O15540 132 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 SLC25A17O43808 307 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 SOX15O60248 233 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 SCGNO76038 276 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 ACTL6BO94805 426 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 CA2P00918 260 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 IGKV1-16P04430 117 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 CTXN2P0C2S0 81 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 EGR2P11161 476 aaPredicted RBP5.46□□□□□ -1.54
VPS41-208ENST00000448833 GP9P14770 177 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 SPNP16150 400 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 RAB6AP20340 208 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 MYL9P24844 172 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 SLURP1P55000 103 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 TMEM50BP56557 158 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 ASPHD1Q5U4P2 390 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 GLDNQ6ZMI3 551 aaPredicted RBP5.46□□□□□ -1.54
VPS41-208ENST00000448833 TMEM91Q6ZNR0 172 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 SGPP2Q8IWX5 399 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 TEX45Q8NA69 505 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 POC5Q8NA72 575 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 DRAXINQ8NBI3 349 aaPredicted RBP5.46□□□□□ -1.54
VPS41-208ENST00000448833 MS4A10Q96PG2 267 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 CLCC1Q96S66 551 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 GINS4Q9BRT9 223 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 TPSG1Q9NRR2 321 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 OR1A1Q9P1Q5 309 aa5.46□□□□□ -1.54
VPS41-208ENST00000448833 KMT2CQ8NEZ4 4911 aaKnown RBP5.46□□□□□ -1.54
VPS41-208ENST00000448833 DNAH9Q9NYC9 4486 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 IGHV4OR15-8A0A075B7B6 117 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 A0A087WW49 117 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 TRBV6-7A0A0A0MS04 114 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 A0A0A6YYD4 124 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 A0A0B4J203 849 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 A8MZ25 164 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 BET1O15155 118 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 LDLRAD4O15165 306 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 AIREO43918 545 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 MRPS14O60783 128 aaKnown RBP5.45□□□□□ -1.54
VPS41-208ENST00000448833 GHRHP01286 108 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 CRHBPP24387 322 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 MAP2K4P45985 399 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 FABP5Q01469 135 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 ARFRP1Q13795 201 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 VMA21Q3ZAQ7 101 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 TMEM177Q53S58 311 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 XP32Q5T750 250 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 Q6ZS49 121 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 ZNF367Q7RTV3 350 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 C5orf24Q7Z6I8 188 aa5.45□□□□□ -1.54
VPS41-208ENST00000448833 SLC25A42Q86VD7 318 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 220.9 ms