RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 CENPKQ9BS16 269 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 EFCAB11Q9BUY7 163 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 GABARAPL3Q9BY60 117 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 ACER3Q9NUN7 267 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 RMND1Q9NWS8 449 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF780BQ9Y6R6 833 aa2.38□□□□□ -2.03
VPS13A-210ENST00000471439 PLAC8L1A1L4L8 177 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 XKRY2A2RUG3 117 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 C5orf49A4QMS7 147 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 CCDC182A6NF36 153 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 HACD1B0YJ81 288 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 PEX7O00628 323 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 PPP1R2P9O14990 202 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 PFDN6O15212 129 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 SLC31A2O15432 143 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 NDUFB3O43676 98 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 CST8O60676 142 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 KCNK2O95069 426 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 VAMP5O95183 116 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 VAPBO95292 243 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 PSMG1O95456 288 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF823P16415 610 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 RPS4Y1P22090 263 aaKnown RBP2.37□□□□□ -2.03
VPS13A-210ENST00000471439 STOMP27105 288 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 CD34P28906 385 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 CDKN1BP46527 198 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 AQP6Q13520 282 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 OR7A5Q15622 319 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 TMEM183BQ1AE95 376 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 FBXO48Q5FWF7 155 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF691Q5VV52 312 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 CARD17Q5XLA6 110 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 LPCAT4Q643R3 524 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 TTC19Q6DKK2 380 aaPredicted RBP2.37□□□□□ -2.03
VPS13A-210ENST00000471439 TMEM53Q6P2H8 277 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 RNASEKQ6P5S7 137 aaKnown RBP2.37□□□□□ -2.03
VPS13A-210ENST00000471439 ASCL4Q6XD76 172 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 Q6ZRU5 148 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 NKAIN4Q8IVV8 208 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 TMEM183AQ8IXX5 376 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 SLC22A24Q8N4F4 322 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 MS4A15Q8N5U1 240 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 CCDC54Q8NEL0 328 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 GIMAP1Q8WWP7 306 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 PEX13Q92968 403 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 TMEM54Q969K7 222 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 CMBLQ96DG6 245 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 ASB9Q96DX5 294 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 WFDC6Q9BQY6 131 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 TOLLIPQ9H0E2 274 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF355PQ9NSJ1 428 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 NUFIP1Q9UHK0 495 aaKnown RBP2.37□□□□□ -2.03
VPS13A-210ENST00000471439 IKZF2Q9UKS7 526 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 PSME2Q9UL46 239 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 HSPE1-MOB4S4R3N1 261 aa2.37□□□□□ -2.03
VPS13A-210ENST00000471439 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.36□□□□□ -2.03
VPS13A-210ENST00000471439 A0A096LNJ9 63 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 TMEM72A0PK05 275 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 LY6LH3BQJ8 138 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 H7C0C1 242 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 UPK1AO00322 258 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 FGGP02679 453 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 HLA-DPB1P04440 258 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 C2P06681 752 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 KLK1P06870 262 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF43P17038 809 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 FKBP2P26885 142 aaKnown RBP2.36□□□□□ -2.03
VPS13A-210ENST00000471439 ATP5OP48047 213 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 TGM4P49221 684 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 NDUFA8P51970 172 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 ZNF92Q03936 586 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 ZBED5Q49AG3 693 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 CDKL4Q5MAI5 379 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 CCNJQ5T5M9 372 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 OR52W1Q6IF63 320 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 PPP1R2P3Q6NXS1 205 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 MED27Q6P2C8 311 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 Q6ZRN7 208 aaPredicted RBP2.36□□□□□ -2.03
VPS13A-210ENST00000471439 ZCCHC23Q6ZST2 131 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 CAMK2N1Q7Z7J9 78 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 C20orf196Q8IYI0 205 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 C5orf56Q8N8D9 126 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 OR1S2Q8NGQ3 325 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 OR13G1Q8NGZ3 307 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 OR11H2Q8NH07 326 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 KCNG3Q8TAE7 436 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 ACTRT1Q8TDG2 376 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 TMEM234Q8WY98 164 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 DDIT4LQ96D03 193 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 SEH1LQ96EE3 360 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 PPP1R2P1Q96PQ5 205 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 SDHCQ99643 169 aaPredicted RBP2.36□□□□□ -2.03
VPS13A-210ENST00000471439 PLEKHA1Q9HB21 404 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 FBXO6Q9NRD1 293 aaPredicted RBP2.36□□□□□ -2.03
VPS13A-210ENST00000471439 HHLA2Q9UM44 414 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 RABL2BQ9UNT1 228 aa2.36□□□□□ -2.03
VPS13A-210ENST00000471439 RRP15Q9Y3B9 282 aaKnown RBP2.36□□□□□ -2.03
VPS13A-210ENST00000471439 F6UB75 175 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 H3BNH8 94 aa2.35□□□□□ -2.03
VPS13A-210ENST00000471439 UBXN8O00124 270 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms