RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TRAV14DV4A0A0A6YYC5 116 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 KBTBD11-OT1A0A1B0GTJ5 212 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 C3orf80F5H4A9 247 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 GGTLC2Q14390 218 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 SAMD5Q5TGI4 173 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 CCL4L1Q8NHW4 92 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 SIRT4Q9Y6E7 314 aaPredicted RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 A0A096LPE4 126 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 A0A1W2PPZ6 126 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 K7EQS6 105 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 MPDU1O75352 247 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 RPS16P62249 146 aaKnown RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 MGAT2Q10469 447 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 OR10D3Q8NH80 312 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 SOCS1O15524 211 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 PPYP01298 95 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 HSD52Q0P140 79 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 STPG1Q5TH74 334 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 ZDHHC23Q8IYP9 409 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 RNASEH2CQ8TDP1 164 aaKnown RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 FOXD3Q9UJU5 478 aaPredicted RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 A0A1B0GTH9 108 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 EPPINO95925 133 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 RAE1P78406 368 aaKnown RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 THSD4Q6ZMP0 1018 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 ZNF385AQ96PM9 386 aaKnown RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 HDHD3Q9BSH5 251 aaPredicted RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 MRPS16Q9Y3D3 137 aaKnown RBP11.56□□□□□ -0.56
USP40-208ENST00000450966 MS4A6AQ9H2W1 248 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 THYN1Q9P016 225 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 ZNF391Q9UJN7 358 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 GFRA3O60609 400 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 PERPQ96FX8 193 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 GRAMD2BQ96HH9 432 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 RPP25Q9BUL9 199 aaKnown RBP11.55□□□□□ -0.56
USP40-208ENST00000450966 IGLV3-16A0A075B6K0 115 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 CDC42EP2O14613 210 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 ISG15P05161 165 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 FAM157BP0CG42 384 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 TNFRSF1AP19438 455 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 KIR2DS2P43631 304 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 INSM1Q01101 510 aaPredicted RBP11.55□□□□□ -0.56
USP40-208ENST00000450966 BIVMQ86UB2 503 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 A0A1W2PP11 408 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 PGPEP1LA6NFU8 196 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 TDGF1P13385 188 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 VSTM2AQ8TAG5 236 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 KIAA0100Q14667 2235 aaKnown RBP11.55□□□□□ -0.56
USP40-208ENST00000450966 DHRS3O75911 302 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 S100A4P26447 101 aaKnown RBP11.55□□□□□ -0.56
USP40-208ENST00000450966 SPANXCQ9NY87 97 aa11.55□□□□□ -0.56
USP40-208ENST00000450966 CD5LO43866 347 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 COL9A1P20849 921 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 FGF11Q92914 225 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 DSPPQ9NZW4 1301 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 DHHO43323 396 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 HYAL3O43820 417 aaPredicted RBP11.54□□□□□ -0.56
USP40-208ENST00000450966 EMDP50402 254 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 C2orf68Q2NKX9 166 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 HSD17B10Q99714 261 aaKnown RBP11.54□□□□□ -0.56
USP40-208ENST00000450966 TAF15Q92804 592 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP40-208ENST00000450966 PLSCR2Q9NRY7 297 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 HILPDAQ9Y5L2 63 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 BRWD3Q6RI45 1802 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 A0A0G2JLM5 398 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 ZNF708P17019 499 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 MPZP25189 248 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 OR10J3Q5JRS4 329 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 ZNF414Q96IQ9 312 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 SOSTQ9BQB4 213 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 H7C2G1 150 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 ZNF324O75467 553 aaPredicted RBP11.54□□□□□ -0.56
USP40-208ENST00000450966 KIR3DL2P43630 455 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 TUSC5Q8IXB3 177 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 BATF2Q8N1L9 274 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 OR2I1PQ8NGU4 316 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 CLDND2Q8NHS1 167 aa11.54□□□□□ -0.56
USP40-208ENST00000450966 TRAV8-4A0A0B4J246 113 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 ASAH2BP0C7U1 165 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 VSIG8P0DPA2 414 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 BTCP35070 178 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 ZNF502Q8TBZ5 544 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 FLRT3Q9NZU0 649 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 SSBP2P81877 361 aaPredicted RBP11.53□□□□□ -0.56
USP40-208ENST00000450966 COX14Q96I36 57 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 FNDC7Q5VTL7 733 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 C1orf174Q8IYL3 243 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 GAPTQ8N292 157 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 TAAR3PQ9P1P4 343 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 A8MWV9 139 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 ATXN7O15265 892 aaPredicted RBP11.53□□□□□ -0.56
USP40-208ENST00000450966 CXCL1P09341 107 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 PGFP49763 221 aa11.53□□□□□ -0.56
USP40-208ENST00000450966 RGPD3A6NKT7 1758 aaPredicted RBP11.53□□□□□ -0.56
USP40-208ENST00000450966 LOC389332A0A1B0GUA5 103 aa11.52□□□□□ -0.56
USP40-208ENST00000450966 ZNF260Q3ZCT1 412 aa11.52□□□□□ -0.56
USP40-208ENST00000450966 TCF23Q7RTU1 214 aa11.52□□□□□ -0.56
USP40-208ENST00000450966 OR1L1Q8NH94 360 aa11.52□□□□□ -0.56
USP40-208ENST00000450966 PLPPR1Q8TBJ4 325 aa11.52□□□□□ -0.56
USP40-208ENST00000450966 NEU1Q99519 415 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms