RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 GAB2Q9UQC2 676 aa15.21■□□□□ 0.03
CLN3-206ENST00000360019 TMEM56-RWDD3S4R434 201 aa15.21■□□□□ 0.03
CLN3-206ENST00000360019 ABCA2Q9BZC7 2435 aa15.21■□□□□ 0.02
CLN3-206ENST00000360019 LINC00473A8K010 186 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 DSCR9P59020 149 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 ARF6P62330 175 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 PRB3Q04118 309 aaPredicted RBP15.2■□□□□ 0.02
CLN3-206ENST00000360019 ZNF596Q8TC21 504 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 C18orf12Q96KH6 178 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 LIN7CQ9NUP9 197 aaKnown RBP15.2■□□□□ 0.02
CLN3-206ENST00000360019 BEX4Q9NWD9 120 aaPredicted RBP15.2■□□□□ 0.02
CLN3-206ENST00000360019 FAM25EA8MYX2 175 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 RAB29O14966 203 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 CDS2O95674 445 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 ZNF16P17020 682 aaPredicted RBP15.2■□□□□ 0.02
CLN3-206ENST00000360019 CLEC12BQ2HXU8 276 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 DEFB113Q30KQ7 82 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 ZNF66Q6ZN08 573 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 LYZL2Q7Z4W2 148 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 LGI3Q8N145 548 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 ABHD12Q8N2K0 398 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 C8orf31Q8N9H6 132 aa15.2■□□□□ 0.02
CLN3-206ENST00000360019 RNF212BA8MTL3 300 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 FAM157AC9JC47 383 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 G3V3Q6 166 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 J3QR06 171 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 M0R1X1 148 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 B3GALNT1O75752 331 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 DUTP33316 252 aaKnown RBP15.19■□□□□ 0.02
CLN3-206ENST00000360019 BRWD1-AS2P59051 145 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 SRPXP78539 464 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 ZNF585BQ52M93 769 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 TMEM268Q5VZI3 342 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 SELENOHQ8IZQ5 122 aaKnown RBP15.19■□□□□ 0.02
CLN3-206ENST00000360019 LINC00311Q8N616 119 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 SLC35G3Q8N808 338 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 DRAXINQ8NBI3 349 aaPredicted RBP15.19■□□□□ 0.02
CLN3-206ENST00000360019 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.19■□□□□ 0.02
CLN3-206ENST00000360019 SEC22AQ96IW7 307 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 HSD17B10Q99714 261 aaKnown RBP15.19■□□□□ 0.02
CLN3-206ENST00000360019 METTL8Q9H825 291 aaKnown RBP15.19■□□□□ 0.02
CLN3-206ENST00000360019 MMP26Q9NRE1 261 aa15.19■□□□□ 0.02
CLN3-206ENST00000360019 HECTD1Q9ULT8 2610 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 IGHV2-26A0A0B4J1V2 119 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 M0R1W7 72 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 ENSAO43768 121 aaKnown RBP15.18■□□□□ 0.02
CLN3-206ENST00000360019 DNASE1P24855 282 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 SRSF4Q08170 494 aaKnown RBP15.18■□□□□ 0.02
CLN3-206ENST00000360019 Q5BKY6 102 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 OR2T35Q8NGX2 323 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 OR9G1Q8NH87 305 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 TCTEX1D2Q8WW35 142 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 WNK2Q9Y3S1 2297 aa15.18■□□□□ 0.02
CLN3-206ENST00000360019 C13orf42A0A1B0GVH6 325 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 hCG_1809904A0A1W2PP81 198 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 A0A1W2PPE2 198 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 A0A1W2PR64 198 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 A0A1W2PRV1 198 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 RAP2BP61225 183 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 CATR1Q13166 79 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 ZFP69Q49AA0 526 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 OR2B11Q5JQS5 317 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 GGNBP1Q5YKI7 109 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 NCR3LG1Q68D85 454 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 ZNF695Q8IW36 515 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 OR10C1Q96KK4 312 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 PDCD10Q9BUL8 212 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 AKAP9Q99996 3911 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 ITPR2Q14571 2701 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 IGHV2-70DA0A0C4DH43 119 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 C5orf51A6NDU8 294 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 RAMP3O60896 148 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 IGKV1-39P01597 117 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 IGKV1D-39P04432 117 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 SERPINE2P07093 398 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 GSG1LQ6UXU4 331 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 LRRC75A-AS1Q8N1F1 130 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 RBPMSQ93062 196 aaKnown RBP15.17■□□□□ 0.02
CLN3-206ENST00000360019 SIRT7Q9NRC8 400 aa15.17■□□□□ 0.02
CLN3-206ENST00000360019 FOXH1O75593 365 aa15.16■□□□□ 0.02
CLN3-206ENST00000360019 C1QBP02746 253 aa15.16■□□□□ 0.02
CLN3-206ENST00000360019 EIF2B2P49770 351 aaKnown RBP15.16■□□□□ 0.02
CLN3-206ENST00000360019 NKX2-5P52952 324 aaPredicted RBP15.16■□□□□ 0.02
CLN3-206ENST00000360019 ZNF833PQ6ZTB9 187 aa15.16■□□□□ 0.02
CLN3-206ENST00000360019 KIR3DL3Q8N743 410 aa15.16■□□□□ 0.02
CLN3-206ENST00000360019 OR10X1Q8NGY0 326 aa15.16■□□□□ 0.02
CLN3-206ENST00000360019 IL22RA2Q969J5 263 aa15.16■□□□□ 0.02
CLN3-206ENST00000360019 LPAR2Q9HBW0 351 aa15.16■□□□□ 0.02
CLN3-206ENST00000360019 POLR3KQ9Y2Y1 108 aaPredicted RBP15.16■□□□□ 0.02
CLN3-206ENST00000360019 IGLV1-47P01700 117 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 COX7A1P24310 79 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 SPAG16Q8N0X2 631 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 ASB13Q8WXK3 278 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 CLEC7AQ9BXN2 247 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 TMED3Q9Y3Q3 217 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 ZNF469Q96JG9 3925 aaPredicted RBP15.15■□□□□ 0.02
CLN3-206ENST00000360019 IFNA21P01568 189 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 SLC25A16P16260 332 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 PRTN3P24158 256 aa15.15■□□□□ 0.02
CLN3-206ENST00000360019 C1orf122Q6ZSJ8 110 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms