RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ITGB1BP1O14713 200 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 GNB3P16520 340 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 CEACAM6P40199 344 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 BEAN1Q3B7T3 259 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 KCTD21Q4G0X4 260 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 RPL39P5Q59GN2 51 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 KHDC1LQ5JSQ8 128 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 FAM71F2Q6NXP2 309 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 FOXRED2Q8IWF2 684 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 STPG2Q8N412 459 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 ABHD14BQ96IU4 210 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 RITA1Q96K30 269 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 RASL11BQ9BPW5 248 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 HSPB9Q9BQS6 159 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 AGMATQ9BSE5 352 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 C11orf54Q9H0W9 315 aaPredicted RBP11.66□□□□□ -0.54
USP28-204ENST00000537642 PIPOXQ9P0Z9 390 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 SSR3Q9UNL2 185 aa11.66□□□□□ -0.54
USP28-204ENST00000537642 NOTOA8MTQ0 251 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 TRDCB7Z8K6 153 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 AP4M1O00189 453 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 RAB29O14966 203 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 HSPA12AO43301 675 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 FCGR3AP08637 254 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 CD3GP09693 182 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 PF4V1P10720 104 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 HIST1H1DP16402 221 aaKnown RBP11.65□□□□□ -0.54
USP28-204ENST00000537642 ZBTB25P24278 435 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 GADD45AP24522 165 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 CNTFRP26992 372 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 ACTBP60709 375 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 MMDQ15546 238 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 NEDD8Q15843 81 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 PTX4Q96A99 478 aa11.65□□□□□ -0.54
USP28-204ENST00000537642 A0A075B6Q4 140 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 METTL21EPA6NDL7 271 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 CT45A6P0DMU7 189 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 CT45A5P0DMU8 189 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 CT45A7P0DMV0 189 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 SOX6P35712 828 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 KPRPQ5T749 579 aaPredicted RBP11.64□□□□□ -0.55
USP28-204ENST00000537642 TPRA1Q86W33 373 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 EDARADDQ8WWZ3 215 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 CHCHD6Q9BRQ6 235 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 ATG5Q9H1Y0 275 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 RNF167Q9H6Y7 350 aa11.64□□□□□ -0.55
USP28-204ENST00000537642 FABP7O15540 132 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 PROP1O75360 226 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 SDC2P34741 201 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 RPL23AP62750 156 aaKnown RBP11.63□□□□□ -0.55
USP28-204ENST00000537642 SLC35B1P78383 322 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 MRPS15P82914 257 aaKnown RBP11.63□□□□□ -0.55
USP28-204ENST00000537642 OXLD1Q5BKU9 147 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 FAM131AQ6UXB0 335 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 GLDNQ6ZMI3 551 aaPredicted RBP11.63□□□□□ -0.55
USP28-204ENST00000537642 C18orf65Q6ZTR6 163 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 COMMD1Q8N668 190 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 WFDC9Q8NEX5 89 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 OR4A4PQ8NGN8 299 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 MAFIPQ8WZ33 124 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 PHF21AQ96BD5 680 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 KCTD7Q96MP8 289 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 GHITMQ9H3K2 345 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 RDH8Q9NYR8 311 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 ZNF230Q9UIE0 474 aaPredicted RBP11.63□□□□□ -0.55
USP28-204ENST00000537642 DAPK2Q9UIK4 370 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 ELF5Q9UKW6 265 aaPredicted RBP11.63□□□□□ -0.55
USP28-204ENST00000537642 RNF150Q9ULK6 438 aa11.63□□□□□ -0.55
USP28-204ENST00000537642 LOC100506127A0A0U1RQW1 187 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 H0YJW9 148 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 NBR2O15453 112 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 PF4P02776 101 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 CLEC2LP0C7M8 214 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 GSTT2P0CG29 244 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 GSTT2BP0CG30 244 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 SNRPBP14678 240 aaKnown RBP11.62□□□□□ -0.55
USP28-204ENST00000537642 CD36P16671 472 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 CFHR3Q02985 330 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 MXD1Q05195 221 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 PNLIPRP3Q17RR3 467 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 IGSF11Q5DX21 431 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 SFXN4Q6P4A7 337 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 ETV3LQ6ZN32 361 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 NPBQ8NG41 125 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 CABLES2Q9BTV7 478 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 TOLLIPQ9H0E2 274 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 ZFP57Q9NU63 452 aa11.62□□□□□ -0.55
USP28-204ENST00000537642 ZNF107Q9UII5 783 aaPredicted RBP11.62□□□□□ -0.55
USP28-204ENST00000537642 OR5H14A6NHG9 310 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 BET1O15155 118 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 NDUFA3O95167 84 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 IGF1P05019 195 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 CD33P20138 364 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 SERPINB10P48595 397 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 ARFRP1Q13795 201 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 KIR2DS1Q14954 304 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 C5orf64Q2M2E5 130 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 TEX38Q6PEX7 206 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 OR5AN1Q8NGI8 311 aa11.61□□□□□ -0.55
USP28-204ENST00000537642 LGALS14Q8TCE9 139 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms