RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 IGLV1-40P01703 118 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 KIAA0141Q14154 515 aaPredicted RBP12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 LIN54Q6MZP7 749 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 ZNF491Q8N8L2 437 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 OR11H1Q8NG94 326 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 SETD6Q8TBK2 473 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 UFD1Q92890 307 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 KLK15Q9H2R5 256 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 RIMS4Q9H426 269 aaPredicted RBP12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 KIAA1456Q9P272 454 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 SLC23A1Q9UHI7 598 aa12.91□□□□□ -0.34
CCDC28B-204ENST00000469003 TRAV41A0A0B4J266 112 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 I3L521 148 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 ITGB1BP1O14713 200 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 OR8U8P0C7N1 319 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 RUNX1Q01196 453 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 LIPKQ5VXJ0 399 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 FAM131AQ6UXB0 335 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 URM1Q9BTM9 101 aaKnown RBP12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 LPAR5Q9H1C0 372 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 GNB4Q9HAV0 340 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 SCOCQ9UIL1 159 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 VSIG4Q9Y279 399 aa12.9□□□□□ -0.34
CCDC28B-204ENST00000469003 OR5H14A6NHG9 310 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 SLC17A2O00624 439 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 SOCS1O15524 211 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 CT45A6P0DMU7 189 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 CT45A5P0DMU8 189 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 CT45A7P0DMV0 189 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 TPBGQ13641 420 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 RPL39P5Q59GN2 51 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 TMEM91Q6ZNR0 172 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 FAM89BQ8N5H3 189 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 MINDY2Q8NBR6 621 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 OR1N2Q8NGR9 330 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 TMEM203Q969S6 136 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 PRR25Q96S07 402 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 GFI1Q99684 422 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 GHITMQ9H3K2 345 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 PLGRKTQ9HBL7 147 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 ISYNA1Q9NPH2 558 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 NKX1-2Q9UD57 310 aaPredicted RBP12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 AK3Q9UIJ7 227 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 MGAT4AQ9UM21 535 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 TPRKBQ9Y3C4 175 aa12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 LSM4Q9Y4Z0 139 aaKnown RBP12.89□□□□□ -0.35
CCDC28B-204ENST00000469003 ANKRD65E5RJM6 399 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 RRHO14718 337 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 ARSBP15848 533 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 MC5RP33032 325 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 ECI1P42126 302 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 RAB9AP51151 201 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 CRIP2P52943 208 aaPredicted RBP12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 AQP4P55087 323 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 HLA-DRB3P79483 266 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 NDPQ00604 133 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 ZNF616Q08AN1 781 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 P2RY14Q15391 338 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 TRAM1Q15629 374 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 C19orf54Q5BKX5 351 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 ASPHD1Q5U4P2 390 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 ZNF660Q6AZW8 331 aaPredicted RBP12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 EDARADDQ8WWZ3 215 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 ABHD14BQ96IU4 210 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 WWC2-AS2Q96NR7 200 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 AGMATQ9BSE5 352 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 HDHD3Q9BSH5 251 aaPredicted RBP12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 PARP12Q9H0J9 701 aaKnown RBP12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 DUSP21Q9H596 190 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 HSF4Q9ULV5 492 aa12.88□□□□□ -0.35
CCDC28B-204ENST00000469003 FOXI3A8MTJ6 420 aaPredicted RBP12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 H0YJW9 148 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 RBBP9O75884 186 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 ARL6IP5O75915 188 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 NHLRC4P0CG21 123 aaPredicted RBP12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 HSMCR30P0CW71 290 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 ZBTB25P24278 435 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 PSMA1P25786 263 aaKnown RBP12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 INSL3P51460 131 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 RPS25P62851 125 aaKnown RBP12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 GNB1P62873 340 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 ZNF260Q3ZCT1 412 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 GLDNQ6ZMI3 551 aaPredicted RBP12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 OR5AN1Q8NGI8 311 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 C11orf54Q9H0W9 315 aaPredicted RBP12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 FBXL15Q9H469 300 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 OR1A1Q9P1Q5 309 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 WASHC3Q9Y3C0 194 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 AK6Q9Y3D8 172 aaKnown RBP12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 FBXO7Q9Y3I1 522 aa12.87□□□□□ -0.35
CCDC28B-204ENST00000469003 HSPA12AO43301 675 aa12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 RGS10O43665 173 aa12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 GSTP1P09211 210 aaKnown RBP12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 CPEP16870 476 aa12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 CEACAM6P40199 344 aa12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 TMEM50BP56557 158 aa12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 CX3CL1P78423 397 aa12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 MLLT11Q13015 90 aaPredicted RBP12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 PLGLAQ15195 96 aa12.86□□□□□ -0.35
CCDC28B-204ENST00000469003 RAB11BQ15907 218 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms