RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TRDCB7Z8K6 153 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 TIMM23O14925 209 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 LANCL1O43813 399 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 IGHV3-7P01780 117 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 ZBTB25P24278 435 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 RCVRNP35243 200 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 PPP1CCP36873 323 aaKnown RBP9.51□□□□□ -0.89
VPS52-213ENST00000461743 TALDO1P37837 337 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 GNMTQ14749 295 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 CT45A1Q5HYN5 189 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 UBE2NLQ5JXB2 153 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 HACD4Q5VWC8 232 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 CCBE1Q6UXH8 406 aaPredicted RBP9.51□□□□□ -0.89
VPS52-213ENST00000461743 TGIF2LXQ8IUE1 241 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 LYSMD2Q8IV50 215 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 Q8N2B8 174 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 CT45A3Q8NHU0 189 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 IL1F10Q8WWZ1 152 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 SLC25A38Q96DW6 304 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 CYYR1Q96J86 154 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 RBM14Q96PK6 669 aaKnown RBP9.51□□□□□ -0.89
VPS52-213ENST00000461743 SLC25A33Q9BSK2 321 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 TOLLIPQ9H0E2 274 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 MMP27Q9H306 513 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 MOB4Q9Y3A3 225 aa9.51□□□□□ -0.89
VPS52-213ENST00000461743 A0A1W2PPE3 182 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 HAX1O00165 279 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 SLC31A2O15432 143 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 FABP7O15540 132 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 HSPA12AO43301 675 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 FGF16O43320 207 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 CD1BP29016 333 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 TGFBR1P36897 503 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 RPS19P39019 145 aaKnown RBP9.5□□□□□ -0.89
VPS52-213ENST00000461743 RAB13P51153 203 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 PROK1P58294 105 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 NCS1P62166 190 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 LSM3P62310 102 aaKnown RBP9.5□□□□□ -0.89
VPS52-213ENST00000461743 ARFRP1Q13795 201 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 EBI3Q14213 229 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 ZNF833PQ6ZTB9 187 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 TMEM219Q86XT9 240 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 LYG1Q8N1E2 194 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 DRAM1Q8N682 238 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 OR52L2PQ8NGH6 319 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 OR56B4Q8NH76 319 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 ACOT12Q8WYK0 555 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 CMTM3Q96MX0 182 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 PRSS22Q9GZN4 317 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 SLIRPQ9GZT3 109 aaKnown RBP9.5□□□□□ -0.89
VPS52-213ENST00000461743 ABCG5Q9H222 651 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 DCSTAMPQ9H295 470 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 CCDC59Q9P031 241 aaKnown RBP9.5□□□□□ -0.89
VPS52-213ENST00000461743 PIPOXQ9P0Z9 390 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 SLC23A1Q9UHI7 598 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 TRRAPQ9Y4A5 3859 aa9.5□□□□□ -0.89
VPS52-213ENST00000461743 A0A075B6Q4 140 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 SNRNP70P08621 437 aaKnown RBP9.49□□□□□ -0.89
VPS52-213ENST00000461743 TRAPPC2P0DI81 140 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 TRAPPC2BP0DI82 140 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 ZNF134P52741 427 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 DEFA1P59665 94 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 DEFA3P59666 94 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 GNG2P59768 71 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 ZNF260Q3ZCT1 412 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 CDNFQ49AH0 187 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 OR8H1Q8NGG4 311 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 OR5H6Q8NGV6 325 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 MCFD2Q8NI22 146 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 AP3S1Q92572 193 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 S1PR3Q99500 378 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 IFI27L2Q9H2X8 130 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 ZNF702PQ9H963 129 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 DIABLOQ9NR28 239 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 ZNF221Q9UK13 617 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 PKD1L1Q8TDX9 2849 aa9.49□□□□□ -0.89
VPS52-213ENST00000461743 CMYA5Q8N3K9 4069 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 SAA2-SAA4A0A096LPE2 208 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 TRBV6-7A0A0A0MS04 114 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 TMEM235A6NFC5 223 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 RAB29O14966 203 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 SCTP09683 121 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 SAA2P0DJI9 122 aaPredicted RBP9.48□□□□□ -0.89
VPS52-213ENST00000461743 TMEM11P17152 192 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 VBP1P61758 197 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 ZNF45Q02386 682 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 DIAPH2-AS1Q14236 149 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 HES1Q14469 280 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 HERPUD1Q15011 391 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 FAM53AQ6NSI3 398 aaPredicted RBP9.48□□□□□ -0.89
VPS52-213ENST00000461743 MOB3BQ86TA1 216 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 ODF3L1Q8IXM7 274 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 POC5Q8NA72 575 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.48□□□□□ -0.89
VPS52-213ENST00000461743 OR2T10Q8NGZ9 312 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 TRIM63Q969Q1 353 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 S100A16Q96FQ6 103 aaKnown RBP9.48□□□□□ -0.89
VPS52-213ENST00000461743 CITED1Q99966 193 aa9.48□□□□□ -0.89
VPS52-213ENST00000461743 NXF2Q9GZY0 626 aaKnown RBP9.48□□□□□ -0.89
VPS52-213ENST00000461743 IGKV1-6A0A0C4DH72 117 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms