RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MMD2Q8IY49 270 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 OR4P4Q8NGL7 312 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 TNS1Q9HBL0 1735 aaKnown RBP11.6□□□□□ -0.55
USP40-208ENST00000450966 TRGV5A0A0B4J1U4 118 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 C19orf48Q6RUI8 117 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 ZNF788Q6ZQV5 615 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 MMP25Q9NPA2 562 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 SLC52A3Q9NQ40 469 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 TMEM140Q9NV12 185 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 CXCL13O43927 109 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 ETHE1O95571 254 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 IZUMO4Q1ZYL8 232 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 ZNF324BQ6AW86 544 aaPredicted RBP11.6□□□□□ -0.55
USP40-208ENST00000450966 MUC15Q8N387 334 aa11.6□□□□□ -0.55
USP40-208ENST00000450966 WNT5AP41221 380 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 ACSF3Q4G176 576 aaPredicted RBP11.59□□□□□ -0.55
USP40-208ENST00000450966 LHFPL4Q7Z7J7 247 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 APOBEC3DQ96AK3 386 aaPredicted RBP11.59□□□□□ -0.55
USP40-208ENST00000450966 TAF1P21675 1872 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 C5orf49A4QMS7 147 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 M0QZ24 198 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 CTSVO60911 334 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 CBLN1P23435 193 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 GZMMP51124 257 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 GFI1BQ5VTD9 330 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 FBXL14Q8N1E6 418 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 MRGPRX3Q96LB0 322 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 FRRS1LQ9P0K9 344 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 A0A087WUJ7 227 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 PDCD6O75340 191 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 CD5P06127 495 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 RPS11P62280 158 aaKnown RBP eCLIP11.59□□□□□ -0.55
USP40-208ENST00000450966 CCL27Q9Y4X3 112 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 KCNE3Q9Y6H6 103 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 A0A1W2PNR3 127 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 GFERP55789 205 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 UCP3P55916 312 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 TMEM50BP56557 158 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 GNB1P62873 340 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 NPEPL1Q8NDH3 523 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 ASB5Q8WWX0 329 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 DIRC2Q96SL1 478 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 OCIAD1Q9NX40 245 aa11.59□□□□□ -0.55
USP40-208ENST00000450966 SERF1AO75920 110 aa11.58□□□□□ -0.55
USP40-208ENST00000450966 DEFB108BQ8NET1 73 aa11.58□□□□□ -0.55
USP40-208ENST00000450966 KISS1RQ969F8 398 aaPredicted RBP11.58□□□□□ -0.55
USP40-208ENST00000450966 GALMQ96C23 342 aa11.58□□□□□ -0.55
USP40-208ENST00000450966 F8VVB4 439 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 F8VWA3 439 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 TBX6O95947 436 aaPredicted RBP11.58□□□□□ -0.56
USP40-208ENST00000450966 SRSF3P84103 164 aaKnown RBP11.58□□□□□ -0.56
USP40-208ENST00000450966 ADIPOQQ15848 244 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 TSPO2Q5TGU0 170 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 FFAR1O14842 300 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 EFNB2P52799 333 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 DUSP2Q05923 314 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 NUMA1Q14980 2115 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 OR4F17Q8NGA8 305 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 ZDHHC16Q969W1 377 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 SLC25A38Q96DW6 304 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 GAGE13Q4V321 117 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 TMEM92Q6UXU6 159 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 ERRFI1Q9UJM3 462 aaPredicted RBP11.58□□□□□ -0.56
USP40-208ENST00000450966 SCN9AQ15858 1988 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 CDIPTO14735 213 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 SPINK8P0C7L1 97 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 GZMBP10144 247 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 OR3A4PP47883 348 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 ZNF137PP52743 207 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 CEACAM16Q2WEN9 425 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 PMS2CLQ68D20 193 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 ST6GALNAC6Q969X2 333 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 SGK494Q96LW2 274 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 WDR54Q9H977 334 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 ICAM5Q9UMF0 924 aa11.58□□□□□ -0.56
USP40-208ENST00000450966 KIRREL2Q6UWL6 708 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 OR4D5Q8NGN0 318 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 C16orf52Q8NHV5 167 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 MYEOVQ96EZ4 313 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 SH3BGRL3Q9H299 93 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 KCNE1BA0A087WTH5 132 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 SH2D7A6NKC9 451 aaPredicted RBP11.57□□□□□ -0.56
USP40-208ENST00000450966 OR1N2Q8NGR9 330 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 A0A1W2PPE3 182 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 SPAG8Q99932 426 aaPredicted RBP11.57□□□□□ -0.56
USP40-208ENST00000450966 IL36BQ9NZH7 164 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 WDR90Q96KV7 1748 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 ECM29Q5VYK3 1845 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 PPIAL4EA0A075B759 164 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 SPRY1O43609 319 aaPredicted RBP11.57□□□□□ -0.56
USP40-208ENST00000450966 TYMSP04818 313 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 PPIAL4FP0DN26 164 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 TMPRSS3P57727 454 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 KIAA1644Q3SXP7 199 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 RTN4RL2Q86UN3 420 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 IMMP2LQ96T52 175 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 C20orf144Q9BQM9 153 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 PPIAL4AQ9Y536 164 aa11.57□□□□□ -0.56
USP40-208ENST00000450966 WNK3Q9BYP7 1800 aa11.56□□□□□ -0.56
USP40-208ENST00000450966 TRAV8-7A0A075B6U6 113 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms