RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HOXA4Q00056 320 aaPredicted RBP15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 MEX3BQ6ZN04 569 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 LYZL2Q7Z4W2 148 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 DTX2Q86UW9 622 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 ZNRF1Q8ND25 227 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 MRGPRDQ8TDS7 321 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 SECTM1Q8WVN6 248 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 AKR1E2Q96JD6 320 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 BBC3Q96PG8 261 aaPredicted RBP15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 ARV1Q9H2C2 271 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 RBM7Q9Y580 266 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 POMT1Q9Y6A1 747 aa15.15■□□□□ 0.02
CCDC88C-203ENST00000389856 TRGV10A0A0A0MS01 117 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 HBZP02008 142 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 SULT1A2P50226 295 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 HTD2P86397 168 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 CR1LQ2VPA4 569 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 SP6Q3SY56 376 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 FAM201AQ5SY85 155 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 BPIFCQ8NFQ6 507 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 OR10V1Q8NGI7 309 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 CCL13Q99616 98 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 RALYQ9UKM9 306 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 UBE2J1Q9Y385 318 aaPredicted RBP15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 TRAV39A0A0B4J263 110 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 CLEC18AA5D8T8 446 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 A6NNC1 897 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 TMPRSS2O15393 492 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 HEXAP06865 529 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 MMP9P14780 707 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 CEACAM6P40199 344 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 PJVKQ0ZLH3 352 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 GNMTQ14749 295 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 LRRC10Q5BKY1 277 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 RPL7L1Q6DKI1 246 aaKnown RBP15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 CLEC18CQ8NCF0 446 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 OR4D5Q8NGN0 318 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 TOLLIPQ9H0E2 274 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 OR2S2Q9NQN1 319 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 FBXL17Q9UF56 701 aa15.14■□□□□ 0.01
CCDC88C-203ENST00000389856 ARFGEF3Q5TH69 2177 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 hADV38S2A0JD32 116 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 ZNF705EA8MWA4 302 aaPredicted RBP15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 NDUFB3O43676 98 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 ZNF205O95201 554 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 TFF1P04155 84 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 PRB1P04280 392 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 PVALBP20472 110 aaPredicted RBP15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 UCP1P25874 307 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 TMEM33P57088 247 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 MEF2CQ06413 473 aaPredicted RBP15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 TBC1D26Q86UD7 250 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 ZNF695Q8IW36 515 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 FOXRED2Q8IWF2 684 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 OR13A1Q8NGR1 328 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 EDARADDQ8WWZ3 215 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 TP53RKQ96S44 253 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 PARP11Q9NR21 331 aa15.13■□□□□ 0.01
CCDC88C-203ENST00000389856 ROS1P08922 2347 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 TMEM218A2RU14 115 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 H0Y980 276 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 SCGB1D2O95969 90 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 MSMO1Q15800 293 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 C11orf71Q6IPW1 123 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 SPAG16Q8N0X2 631 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 ZBTB34Q8NCN2 500 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 OR1L1Q8NH94 360 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 TIMD4Q96H15 378 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 OR1A1Q9P1Q5 309 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 KAAG1Q9UBP8 84 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 SLC25A10Q9UBX3 287 aaPredicted RBP15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 JPT1Q9UK76 154 aa15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 SPTBN1Q01082 2364 aaKnown RBP15.12■□□□□ 0.01
CCDC88C-203ENST00000389856 RNF212BA8MTL3 300 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 C19orf84I3L1E1 186 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 APOC3P02656 99 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 SEC11BP0C7V7 166 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 DANCRP0C864 163 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 RAB5CP51148 216 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 COMMD1Q8N668 190 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 FAM216BQ8N7L0 139 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 SLC35G3Q8N808 338 aa15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 FAM212BQ9NTI7 297 aaPredicted RBP15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 RAI1Q7Z5J4 1906 aaPredicted RBP15.11■□□□□ 0.01
CCDC88C-203ENST00000389856 ADAM20O43506 726 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 SLC25A6P12236 298 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 NDUFB7P17568 137 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 VDAC1P21796 283 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 C10orf91Q5T1B1 145 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 SELENOHQ8IZQ5 122 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 TPRX1Q8N7U7 411 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 LHFPL5Q8TAF8 219 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 SPOCK3Q9BQ16 436 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 UBTD1Q9HAC8 227 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 DCAF16Q9NXF7 216 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 ZNF729A6NN14 1252 aaPredicted RBP15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 C15orf65H3BRN8 121 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 HSD17B6O14756 317 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 F2RL1P55085 397 aa15.1■□□□□ 0.01
CCDC88C-203ENST00000389856 ZNF818PQ6ZRF7 136 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms