RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 C4orf46Q504U0 113 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 TMEM128Q5BJH2 165 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 METTL11BQ5VVY1 283 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 FAHD2BQ6P2I3 314 aaPredicted RBP16.29■□□□□ 0.2
CLN3-205ENST00000359984 FAHD2AQ96GK7 314 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 OR2D2Q9H210 308 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 KCNS2Q9ULS6 477 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 POLR3KQ9Y2Y1 108 aaPredicted RBP16.29■□□□□ 0.2
CLN3-205ENST00000359984 PDZD2O15018 2839 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 CXCL3P19876 107 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 GNG10P50151 68 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 DLX1P56177 255 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 DHODHQ02127 395 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 ABHD14BQ96IU4 210 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 ABHD14AQ9BUJ0 271 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 LPAR2Q9HBW0 351 aa16.28■□□□□ 0.2
CLN3-205ENST00000359984 A0A087X0M5 115 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 A0A1B0GX30 115 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 M0R1W7 72 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 RGS13O14921 159 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 UBE2MP61081 183 aaKnown RBP16.27■□□□□ 0.2
CLN3-205ENST00000359984 DHRS2Q13268 280 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 DRAM1Q8N682 238 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 BVESQ8NE79 360 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 FAM216AQ8WUB2 273 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 GPHA2Q96T91 129 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 TMEM133Q9H2Q1 129 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 IFI27L2Q9H2X8 130 aa16.27■□□□□ 0.2
CLN3-205ENST00000359984 hCG_1809904A0A1W2PP81 198 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 A0A1W2PPE2 198 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 A0A1W2PR64 198 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 A0A1W2PRV1 198 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 RND3P61587 244 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 SUPT4H1P63272 117 aaKnown RBP16.27■□□□□ 0.19
CLN3-205ENST00000359984 SLC25A48Q6ZT89 311 aaKnown RBP16.27■□□□□ 0.19
CLN3-205ENST00000359984 KIR3DL3Q8N743 410 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 ZNF645Q8N7E2 425 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 RTN4IP1Q8WWV3 396 aaPredicted RBP16.27■□□□□ 0.19
CLN3-205ENST00000359984 C5orf30Q96GV9 206 aa16.27■□□□□ 0.19
CLN3-205ENST00000359984 GPN1Q9HCN4 374 aaPredicted RBP16.27■□□□□ 0.19
CLN3-205ENST00000359984 C9orf170A2RU37 121 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 CRYM-AS1A6NIL9 109 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 RAB7AP51149 207 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 PRB3Q04118 309 aaPredicted RBP16.26■□□□□ 0.19
CLN3-205ENST00000359984 Q3ZCU0 254 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 C1orf122Q6ZSJ8 110 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 LYG2Q86SG7 212 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 CMTM1Q8IZ96 169 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 AKR1E2Q96JD6 320 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 Q96MF0 132 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 ZNRD1Q9P1U0 126 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 BOLA1Q9Y3E2 137 aa16.26■□□□□ 0.19
CLN3-205ENST00000359984 TEX13DA0A0J9YY54 714 aaPredicted RBP16.25■□□□□ 0.19
CLN3-205ENST00000359984 SNRPGP15A8MWD9 76 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 RNF223E7ERA6 249 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 SMLR1H3BR10 107 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 MPPED1O15442 326 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 TNFSF12O43508 249 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 PGLYRP1O75594 196 aaPredicted RBP16.25■□□□□ 0.19
CLN3-205ENST00000359984 HLA-AP01891 365 aaKnown RBP16.25■□□□□ 0.19
CLN3-205ENST00000359984 VAMP1P23763 118 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 CD34P28906 385 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 ZNF626Q68DY1 528 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 ABHD12Q8N2K0 398 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 CCDC71LQ8N9Z2 235 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 ZNF431Q8TF32 576 aaPredicted RBP16.25■□□□□ 0.19
CLN3-205ENST00000359984 PLSCR3Q9NRY6 295 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 KPTNQ9Y664 436 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 SLC22A5O76082 557 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 ANXA3P12429 323 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 GPR12P47775 334 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 LOXL1Q08397 574 aaPredicted RBP16.25■□□□□ 0.19
CLN3-205ENST00000359984 MSMO1Q15800 293 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 Q5BKY6 102 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 TBC1D26Q86UD7 250 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 REG4Q9BYZ8 158 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 NAA60Q9H7X0 242 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 METTL8Q9H825 291 aaKnown RBP16.25■□□□□ 0.19
CLN3-205ENST00000359984 SDHAF2Q9NX18 166 aa16.25■□□□□ 0.19
CLN3-205ENST00000359984 ABCA2Q9BZC7 2435 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 J3QR06 171 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 CREBL2O60519 120 aaPredicted RBP16.24■□□□□ 0.19
CLN3-205ENST00000359984 ATP6V1G1O75348 118 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 SFT2D2O95562 160 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 PRTN3P24158 256 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 DVL1P1P54792 670 aaPredicted RBP16.24■□□□□ 0.19
CLN3-205ENST00000359984 SGPP2Q8IWX5 399 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 ODF3L1Q8IXM7 274 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 C8orf31Q8N9H6 132 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 ZBTB34Q8NCN2 500 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 OR9G1Q8NH87 305 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 SIRT7Q9NRC8 400 aa16.24■□□□□ 0.19
CLN3-205ENST00000359984 IGHV2-26A0A0B4J1V2 119 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 PROP1O75360 226 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 EIF4EBP1Q13541 118 aaPredicted RBP16.23■□□□□ 0.19
CLN3-205ENST00000359984 SLC9A3R2Q15599 337 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 LAMTOR1Q6IAA8 161 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 BTNL3Q6UXE8 466 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 LYG1Q8N1E2 194 aa16.23■□□□□ 0.19
CLN3-205ENST00000359984 LINC00311Q8N616 119 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms