RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 VPS13CQ709C8 3753 aa15.24■□□□□ 0.03
USP39-201ENST00000323701 MMP23AO75900 390 aa15.24■□□□□ 0.03
USP39-201ENST00000323701 HTD2P86397 168 aa15.24■□□□□ 0.03
USP39-201ENST00000323701 CYCSP99999 105 aaKnown RBP15.24■□□□□ 0.03
USP39-201ENST00000323701 NINJ1Q92982 152 aa15.24■□□□□ 0.03
USP39-201ENST00000323701 YLPM1P49750 1951 aaKnown RBP15.23■□□□□ 0.03
USP39-201ENST00000323701 H0Y980 276 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 I3L521 148 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 IFNA21P01568 189 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 IGKV1-39P01597 117 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 IGKV1D-39P04432 117 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 NDUFB7P17568 137 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 S100A11P31949 105 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 RPL30P62888 115 aaKnown RBP15.23■□□□□ 0.03
USP39-201ENST00000323701 C11orf71Q6IPW1 123 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 BTNL3Q6UXE8 466 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 THAP6Q8TBB0 222 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 FAM234AQ9H0X4 552 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 C19orf12Q9NSK7 152 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 PSG11Q9UQ72 335 aa15.23■□□□□ 0.03
USP39-201ENST00000323701 MSGN1A6NI15 193 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 F2RL2O00254 374 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 PROP1O75360 226 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 RRASP10301 218 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 S100A10P60903 97 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 EIF4EBP1Q13541 118 aaPredicted RBP15.22■□□□□ 0.03
USP39-201ENST00000323701 AANATQ16613 207 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 MORN2Q502X0 79 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 TRAT1Q6PIZ9 186 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 ZNF645Q8N7E2 425 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 OR6C3Q9NZP0 311 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 GNG12Q9UBI6 72 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 SLC25A10Q9UBX3 287 aaPredicted RBP15.22■□□□□ 0.03
USP39-201ENST00000323701 A0A0G2JRQ6 117 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 ADAM20O43506 726 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 DANCRP0C864 163 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 ZNF16P17020 682 aaPredicted RBP15.22■□□□□ 0.03
USP39-201ENST00000323701 BRWD1-AS2P59051 145 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 ZNF585BQ52M93 769 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 ZNF695Q8IW36 515 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 OR1S1Q8NH92 325 aa15.22■□□□□ 0.03
USP39-201ENST00000323701 UBR5O95071 2799 aaPredicted RBP15.21■□□□□ 0.03
USP39-201ENST00000323701 KBTBD11-OT1A0A1B0GTJ5 212 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 A0A1W2PPE3 182 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 SLC31A2O15432 143 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 MBPP02686 304 aaPredicted RBP15.21■□□□□ 0.03
USP39-201ENST00000323701 IGFBP2P18065 325 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 ZNF273Q14593 569 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 IZUMO4Q1ZYL8 232 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 DCUN1D4Q92564 292 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 AKR1E2Q96JD6 320 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 NCOR1P1Q9H4R4 102 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 CLN8Q9UBY8 286 aa15.21■□□□□ 0.03
USP39-201ENST00000323701 NKX6-3A6NJ46 265 aa15.21■□□□□ 0.02
USP39-201ENST00000323701 SCO1O75880 301 aa15.21■□□□□ 0.02
USP39-201ENST00000323701 HFEQ30201 348 aa15.21■□□□□ 0.02
USP39-201ENST00000323701 C1orf229Q6ZS94 237 aaPredicted RBP15.21■□□□□ 0.02
USP39-201ENST00000323701 RBPMSQ93062 196 aaKnown RBP15.21■□□□□ 0.02
USP39-201ENST00000323701 CBLN4Q9NTU7 201 aa15.21■□□□□ 0.02
USP39-201ENST00000323701 SDHAF2Q9NX18 166 aa15.21■□□□□ 0.02
USP39-201ENST00000323701 RAMP3O60896 148 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 SCGB1D2O95969 90 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 CTRB1P17538 263 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 PPOXP50336 477 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 RAB14P61106 215 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 NMSQ5H8A3 153 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 OR2B11Q5JQS5 317 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 CTRB2Q6GPI1 263 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 PRSS54Q6PEW0 395 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 TMED3Q9Y3Q3 217 aa15.2■□□□□ 0.02
USP39-201ENST00000323701 TRGV10A0A0A0MS01 117 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 RP2O75695 350 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 LYL1P12980 280 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 C4BPBP20851 252 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 ALKAL2Q6UX46 152 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 RBMXL1Q96E39 390 aaKnown RBP15.19■□□□□ 0.02
USP39-201ENST00000323701 JPT1Q9UK76 154 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 LAMP3Q9UQV4 416 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 LINC00473A8K010 186 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 DVL1O14640 695 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 ACOT7LQ6ZUV0 252 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 KCNRGQ8N5I3 272 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 CXorf58Q96LI9 332 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 LSM5Q9Y4Y9 91 aaKnown RBP15.19■□□□□ 0.02
USP39-201ENST00000323701 SVEP1Q4LDE5 3571 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 LRRK2Q5S007 2527 aa15.19■□□□□ 0.02
USP39-201ENST00000323701 C1QL1O75973 258 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 WNT2P09544 360 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 CCL3L1P16619 93 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 RPL31P62899 125 aaKnown RBP15.18■□□□□ 0.02
USP39-201ENST00000323701 SRPXP78539 464 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 Q3ZCU0 254 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 AVPI1Q5T686 147 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 PXDC1Q5TGL8 231 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 PRAMEF5Q5TYX0 476 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 Q6ZRM9 215 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 OR4D5Q8NGN0 318 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 REG4Q9BYZ8 158 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 IFI27L2Q9H2X8 130 aa15.18■□□□□ 0.02
USP39-201ENST00000323701 ZNRD1Q9P1U0 126 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms