RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SCGB1D4Q6XE38 83 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OLIG3Q7RTU3 272 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TAC4Q86UU9 113 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 NATD1Q8N6N6 113 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 CLDN22Q8N7P3 220 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 SLC35G3Q8N808 338 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 GATD1Q8NB37 220 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 C11orf72Q8NBR9 251 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 ZNF680Q8NEM1 530 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OR1M1Q8NGA1 313 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OR4M2Q8NGB6 313 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OR4C13Q8NGP0 309 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OR6K3Q8NGY3 331 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 MCFD2Q8NI22 146 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 SCGB1C1Q8TD33 95 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 HAVCR2Q8TDQ0 301 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TWIST2Q8WVJ9 160 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TMBIM1Q969X1 311 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 RAD51AP1Q96B01 352 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 PPCDCQ96CD2 204 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 ZHX1-C8orf76Q96EF9 292 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 SMARCD1Q96GM5 515 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 PRAP1Q96NZ9 151 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 GPR82Q96P67 336 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 CMSS1Q9BQ75 279 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 EBPLQ9BY08 206 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 MROQ9BYG7 248 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TBL1XR1Q9BZK7 514 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 TRIM4Q9C037 500 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 EIF5A2Q9GZV4 153 aaKnown RBP1.39□□□□□ -2.19
CD44-239ENST00000639002 TLNRD1Q9H1K6 362 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 OR51I2Q9H344 312 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 POMKQ9H5K3 350 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 FAM96AQ9H5X1 160 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 C19orf12Q9NSK7 152 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 SIGLEC7Q9Y286 467 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 ZNF780BQ9Y6R6 833 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 NCOR2Q9Y618 2525 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 SPTBN4Q9H254 2564 aa1.39□□□□□ -2.19
CD44-239ENST00000639002 COL11A1P12107 1806 aaPredicted RBP1.38□□□□□ -2.19
CD44-239ENST00000639002 SIGLEC1Q9BZZ2 1709 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 CCDC168Q8NDH2 2452 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 KMT2EQ8IZD2 1858 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 IGHV3OR16-8A0A075B7F1 116 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 A0A0G2JMP0 313 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 A0A0X1KG70 313 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 LOC389332A0A1B0GUA5 103 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 ZNF98A6NK75 572 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 BTNL10A8MVZ5 291 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 ZNF878C9JN71 531 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 C9JQL5 133 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 D6RAR5 112 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 H3BP45 60 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 M0R1X1 148 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 MFNGO00587 321 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 COPEO14579 308 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 RGS5O15539 181 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 SLC37A4O43826 429 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 PFDN1O60925 122 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 DEDDO75618 318 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 CNMDO75829 334 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 DHRS3O75911 302 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 OR2A4O95047 310 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 IFNA14P01570 189 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 HBZP02008 142 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 IGKV5-2P06315 115 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 OR4A8P0C604 315 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 OR4Q2P0C623 313 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 CECR9P0C854 216 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 IFI30P13284 250 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 NELFEP18615 380 aaKnown RBP1.38□□□□□ -2.19
CD44-239ENST00000639002 GFERP55789 205 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 H2BFSP57053 126 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 TAS2R43P59537 309 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 NAA20P61599 178 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 DYNLL1P63167 89 aaKnown RBP1.38□□□□□ -2.19
CD44-239ENST00000639002 FLI1Q01543 452 aaPredicted RBP1.38□□□□□ -2.19
CD44-239ENST00000639002 FMODQ06828 376 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 BIKQ13323 160 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 OR2F1Q13607 317 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 ZNF235Q14590 738 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 EBPQ15125 230 aaKnown RBP1.38□□□□□ -2.19
CD44-239ENST00000639002 RSU1Q15404 277 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 ALX1Q15699 326 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 ARHGAP11BQ3KRB8 267 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 TMEM97Q5BJF2 176 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 RNASE13Q5GAN3 156 aaKnown RBP1.38□□□□□ -2.19
CD44-239ENST00000639002 FAM222AQ5U5X8 452 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 NXNL2Q5VZ03 156 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 TMEM236Q5W0B7 351 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 OR10K2Q6IF99 312 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 ZNF773Q6PK81 442 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 HIST2H3AQ71DI3 136 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 SLC36A1Q7Z2H8 476 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 NAA40Q86UY6 237 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 OR6V1Q8N148 313 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 LRRC25Q8N386 305 aaPredicted RBP1.38□□□□□ -2.19
CD44-239ENST00000639002 ZNF664Q8N3J9 261 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 TMEM161BQ8NDZ6 487 aa1.38□□□□□ -2.19
CD44-239ENST00000639002 OR4M1Q8NGD0 313 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms