RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 NKAIN3Q8N8D7 197 aa16.4■□□□□ 0.22
COL9A3-207ENST00000467819 ANKRD60Q9BZ19 345 aa16.4■□□□□ 0.22
COL9A3-207ENST00000467819 OR51J1Q9H342 316 aa16.4■□□□□ 0.22
COL9A3-207ENST00000467819 IGHV7-81A0A0B4J1V7 117 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 EFCAB10A6NFE3 127 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 MYL12BO14950 172 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 NBR2O15453 112 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 LY86O95711 162 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 HLA-DRB1P01911 266 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 HTD2P86397 168 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 ASPHD1Q5U4P2 390 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 ZNF554Q86TJ5 538 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 ZNF491Q8N8L2 437 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 OR1N2Q8NGR9 330 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 UBE2E2Q96LR5 201 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 CHCHD6Q9BRQ6 235 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 UQCC2Q9BRT2 126 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 VSIG4Q9Y279 399 aa16.39■□□□□ 0.21
COL9A3-207ENST00000467819 ZNF256Q9Y2P7 627 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-207ENST00000467819 SAA2-SAA4A0A096LPE2 208 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 TRAV41A0A0B4J266 112 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 I3L521 148 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 YPEL1O60688 119 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 RGS11O94810 467 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 OR8U8P0C7N1 319 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 SAA2P0DJI9 122 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-207ENST00000467819 MAPK3P27361 379 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-207ENST00000467819 BLVRBP30043 206 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-207ENST00000467819 WNT4P56705 351 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 GNB1P62873 340 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 ZNF616Q08AN1 781 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 KIAA0141Q14154 515 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-207ENST00000467819 C5orf64Q2M2E5 130 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 C6orf141Q5SZD1 244 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 ZNF833PQ6ZTB9 187 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 AHSA2Q719I0 299 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 OR2AK2Q8NG84 335 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 GALMQ96C23 342 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 NEDD4LQ96PU5 975 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 YPEL2Q96QA6 119 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 SULT4A1Q9BR01 284 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 CST11Q9H112 138 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 KIAA1456Q9P272 454 aa16.38■□□□□ 0.21
COL9A3-207ENST00000467819 HUWE1Q7Z6Z7 4374 aaKnown RBP16.38■□□□□ 0.21
COL9A3-207ENST00000467819 IGLV1-40P01703 118 aa16.37■□□□□ 0.21
COL9A3-207ENST00000467819 INSL4Q14641 139 aa16.37■□□□□ 0.21
COL9A3-207ENST00000467819 OR10K2Q6IF99 312 aa16.37■□□□□ 0.21
COL9A3-207ENST00000467819 IL1F10Q8WWZ1 152 aa16.37■□□□□ 0.21
COL9A3-207ENST00000467819 THRSPQ92748 146 aa16.37■□□□□ 0.21
COL9A3-207ENST00000467819 CNOT2Q9NZN8 540 aaKnown RBP16.37■□□□□ 0.21
COL9A3-207ENST00000467819 GHRLQ9UBU3 117 aa16.37■□□□□ 0.21
COL9A3-207ENST00000467819 EBAG9O00559 213 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 CD1AP06126 327 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 GNAO1P09471 354 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 CHATP28329 748 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 RUNX1Q01196 453 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 HMGN3Q15651 99 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 ECSCRQ19T08 205 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 LAIR2Q6ISS4 152 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 LIN54Q6MZP7 749 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 FAM131AQ6UXB0 335 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 C6orf201Q7Z4U5 140 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 C8orf59Q8N0T1 100 aaPredicted RBP16.36■□□□□ 0.21
COL9A3-207ENST00000467819 PACRGLQ8N7B6 248 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 FAAP24Q9BTP7 215 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 IFI27L2Q9H2X8 130 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 ABRACLQ9P1F3 81 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 PSORS1C1Q9UIG5 152 aa16.36■□□□□ 0.21
COL9A3-207ENST00000467819 ST8SIA5O15466 376 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 RAB9AP51151 201 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 NDPQ00604 133 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 FAM27D1Q5T7N8 215 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 BPIFB6Q8NFQ5 453 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 NPBQ8NG41 125 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 DCUN1D4Q92564 292 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 ALX4Q9H161 411 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-207ENST00000467819 KCNK15Q9H427 330 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 C8orf4Q9NR00 106 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 FBXO7Q9Y3I1 522 aa16.35■□□□□ 0.21
COL9A3-207ENST00000467819 NDUFA3O95167 84 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 UBBP0CG47 229 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 INSL3P51460 131 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 LY6G6FQ5SQ64 297 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 NANOGP1Q8N7R0 232 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 SETD6Q8TBK2 473 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 CASTOR1Q8WTX7 329 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 TMEM59Q9BXS4 323 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 FBXL15Q9H469 300 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 CHMP1AQ9HD42 196 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-207ENST00000467819 ISYNA1Q9NPH2 558 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 STEAP1Q9UHE8 339 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 LRRC42Q9Y546 428 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 A3GALT2U3KPV4 340 aa16.34■□□□□ 0.21
COL9A3-207ENST00000467819 A0A1W2PN81 502 aa16.33■□□□□ 0.2
COL9A3-207ENST00000467819 OVOL1O14753 267 aa16.33■□□□□ 0.2
COL9A3-207ENST00000467819 HTR2CP28335 458 aa16.33■□□□□ 0.2
COL9A3-207ENST00000467819 CHRNA7P36544 502 aa16.33■□□□□ 0.2
COL9A3-207ENST00000467819 RPS27AP62979 156 aaKnown RBP16.33■□□□□ 0.2
COL9A3-207ENST00000467819 GABPB1Q06547 395 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-207ENST00000467819 PLGLAQ15195 96 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms