RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 SSR4P51571 173 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 RPL23P62829 140 aaKnown RBP15.68■□□□□ 0.1
CCDC3-201ENST00000378825 Q6ZS49 121 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 IMMP1LQ96LU5 166 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 PRSS50Q9UI38 385 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 IFNA10P01566 189 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 RNPS1Q15287 305 aaKnown RBP15.67■□□□□ 0.1
CCDC3-201ENST00000378825 OR51G1Q8NGK1 321 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 FUT9Q9Y231 359 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 OR2W1Q9Y3N9 320 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 AHCTF1Q8WYP5 2266 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 ASPMQ8IZT6 3477 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 IGHV3-64DA0A0J9YX35 117 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 DUXBA0A1W2PPF3 345 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 TRAPPC6AO75865 159 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 FGF7P21781 194 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 LRRC75BQ2VPJ9 315 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 CYB5R2Q6BCY4 276 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 FAM53AQ6NSI3 398 aaPredicted RBP15.67■□□□□ 0.1
CCDC3-201ENST00000378825 THOC3Q96J01 351 aaKnown RBP15.67■□□□□ 0.1
CCDC3-201ENST00000378825 RAB40CQ96S21 281 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 C1QTNF5Q9BXJ0 243 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 TRAV24A0A0B4J272 114 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 C5orf49A4QMS7 147 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 MKRN2OSH3BPM6 223 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 KLF7O75840 302 aaPredicted RBP15.67■□□□□ 0.1
CCDC3-201ENST00000378825 GALR1P47211 349 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 ACSM6Q6P461 480 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 MRGPRGQ86SM5 289 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 LRP11Q86VZ4 500 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 Q8NFD4 153 aa15.67■□□□□ 0.1
CCDC3-201ENST00000378825 GPR179Q6PRD1 2367 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 KIR2DS1A0A191URI9 304 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 DVL1O14640 695 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 KIR2DS4P43632 304 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 KIR2DS1Q14954 304 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 BSXQ3C1V8 233 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 RPS19BP1Q86WX3 136 aaKnown RBP15.66■□□□□ 0.1
CCDC3-201ENST00000378825 OR10V1Q8NGI7 309 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 OR10J5Q8NHC4 309 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 SPSB4Q96A44 273 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 C2orf88Q9BSF0 95 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 WDR61Q9GZS3 305 aaKnown RBP15.66■□□□□ 0.1
CCDC3-201ENST00000378825 SH2D2AQ9NP31 389 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 NCOR1O75376 2440 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 CD300LBA8K4G0 201 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 CBR3O75828 277 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 EGR1P18146 543 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 CASP6P55212 293 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 LPAL2Q16609 132 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 TMEM241Q24JQ0 296 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 ZNF585BQ52M93 769 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.66■□□□□ 0.1
CCDC3-201ENST00000378825 SGCZQ96LD1 299 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 SF3B5Q9BWJ5 86 aaKnown RBP15.66■□□□□ 0.1
CCDC3-201ENST00000378825 NAT8Q9UHE5 227 aa15.66■□□□□ 0.1
CCDC3-201ENST00000378825 TRAPPC2LH3BP13 241 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 FGF5P12034 268 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 NUBP1P53384 320 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 MEF2BQ02080 365 aaPredicted RBP15.65■□□□□ 0.1
CCDC3-201ENST00000378825 PMS2P11Q13670 270 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 TMEM41BQ5BJD5 291 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 DNLZQ5SXM8 178 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 LURAP1Q96LR2 239 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 DDA1Q9BW61 102 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 PARLQ9H300 379 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 SLC39A9Q9NUM3 307 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 WDR1O75083 606 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 RHBDL1O75783 438 aa15.65■□□□□ 0.1
CCDC3-201ENST00000378825 IDH3GP51553 393 aaPredicted RBP15.65■□□□□ 0.1
CCDC3-201ENST00000378825 REPIN1Q9BWE0 567 aaKnown RBP15.65■□□□□ 0.1
CCDC3-201ENST00000378825 H7BYZ3 331 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 CYP2G1PQ6ZSU1 146 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 TAF15Q92804 592 aaKnown RBP eCLIP15.64■□□□□ 0.09
CCDC3-201ENST00000378825 IL22RA2Q969J5 263 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 ADGRG7Q96K78 797 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 ZNF391Q9UJN7 358 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 KCNS2Q9ULS6 477 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 PPP5D1E7EU14 171 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 FAM3BP58499 235 aaPredicted RBP15.64■□□□□ 0.09
CCDC3-201ENST00000378825 PMP22Q01453 160 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 OR5P3Q8WZ94 311 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 PYGO2Q9BRQ0 406 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 NDUFAF3Q9BU61 184 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 PRO3102Q9H379 93 aa15.64■□□□□ 0.09
CCDC3-201ENST00000378825 C1QTNF9BB2RNN3 333 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 TCAPO15273 167 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 SOX15O60248 233 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 ARF1P84077 181 aaKnown RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 OR4F5Q8NH21 305 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 RNASEH2CQ8TDP1 164 aaKnown RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 PSMF1Q92530 271 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 RAB24Q969Q5 203 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 OR4F4Q96R69 305 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 P2RX4Q99571 388 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 CDX2Q99626 313 aaPredicted RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 CTDSP1Q9GZU7 261 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 DOCK10Q96BY6 2186 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 LOC102723996A0A087X1L8 192 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 KBTBD11O94819 623 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms