RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 NFYBP25208 207 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 FCN2Q15485 313 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 TMEM30BQ3MIR4 351 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 NOXA1Q86UR1 476 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 ADAD2Q8NCV1 583 aaKnown RBP16.34■□□□□ 0.21
CLN3-205ENST00000359984 OR10A7Q8NGE5 316 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 OR52M1Q8NGK5 317 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 SECTM1Q8WVN6 248 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 YPEL2Q96QA6 119 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 SLC5A7Q9GZV3 580 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 OR51J1Q9H342 316 aa16.34■□□□□ 0.21
CLN3-205ENST00000359984 C17orf98A8MV24 154 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 A8MXK9 166 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 LIPFP07098 398 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 SLC25A16P16260 332 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 LCN2P80188 198 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 ZFAND1Q8TCF1 268 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 LEAP2Q969E1 77 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 RSRP1Q9BUV0 290 aa16.33■□□□□ 0.21
CLN3-205ENST00000359984 A0A1W2PPH5 198 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 IGHV3-7P01780 117 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 CTSDP07339 412 aaPredicted RBP16.33■□□□□ 0.2
CLN3-205ENST00000359984 OR8U9P0C7N5 309 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 GNRHRP30968 328 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 LUMP51884 338 aaPredicted RBP16.33■□□□□ 0.2
CLN3-205ENST00000359984 IFITM2Q01629 132 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 SLC25A42Q86VD7 318 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 SLC38A6Q8IZM9 456 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 OR8U1Q8NH10 309 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 CAPSLQ8WWF8 208 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 ALX4Q9H161 411 aaPredicted RBP16.33■□□□□ 0.2
CLN3-205ENST00000359984 MED28Q9H204 178 aa16.33■□□□□ 0.2
CLN3-205ENST00000359984 PAIP2BQ9ULR5 123 aaKnown RBP16.33■□□□□ 0.2
CLN3-205ENST00000359984 FAM157AC9JC47 383 aa16.32■□□□□ 0.2
CLN3-205ENST00000359984 Q5PR19 223 aa16.32■□□□□ 0.2
CLN3-205ENST00000359984 OR11H7Q8NGC8 314 aa16.32■□□□□ 0.2
CLN3-205ENST00000359984 CCL28Q9NRJ3 127 aa16.32■□□□□ 0.2
CLN3-205ENST00000359984 C14orf166Q9Y224 244 aaKnown RBP16.32■□□□□ 0.2
CLN3-205ENST00000359984 RBM7Q9Y580 266 aaKnown RBP16.32■□□□□ 0.2
CLN3-205ENST00000359984 YLPM1P49750 1951 aaKnown RBP16.32■□□□□ 0.2
CLN3-205ENST00000359984 PRAF2O60831 178 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 RGS11O94810 467 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 C1QBP02746 253 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 ZNF134P52741 427 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 PAX2Q02962 417 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 LPCAT3Q6P1A2 487 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 TMEM230Q96A57 120 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 DACT3Q96B18 629 aaPredicted RBP16.31■□□□□ 0.2
CLN3-205ENST00000359984 SEC22CQ9BRL7 303 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 ONECUT1Q9UBC0 465 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 MAP1AP78559 2803 aaPredicted RBP16.31■□□□□ 0.2
CLN3-205ENST00000359984 ARHGAP32A7KAX9 2087 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 FOXH1O75593 365 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 IL5P05113 134 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 OR4E1P0C645 316 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 IGHV1-8P0DP01 117 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 AKR1C4P17516 323 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 USF1P22415 310 aaPredicted RBP16.31■□□□□ 0.2
CLN3-205ENST00000359984 GZMKP49863 264 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 PHLDA2Q53GA4 152 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 RNF150Q9ULK6 438 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 PSG11Q9UQ72 335 aa16.31■□□□□ 0.2
CLN3-205ENST00000359984 MED13LQ71F56 2210 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 HSD17B6O14756 317 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 ST8SIA5O15466 376 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 ENSAO43768 121 aaKnown RBP16.3■□□□□ 0.2
CLN3-205ENST00000359984 LY6G6FQ5SQ64 297 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 PRSS57Q6UWY2 283 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 GLDNQ6ZMI3 551 aaPredicted RBP16.3■□□□□ 0.2
CLN3-205ENST00000359984 ZNF818PQ6ZRF7 136 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 KRTAP1-3Q8IUG1 177 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 OR2AK2Q8NG84 335 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 EDARADDQ8WWZ3 215 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 AGMATQ9BSE5 352 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 SUCNR1Q9BXA5 334 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 VPS13CQ709C8 3753 aa16.3■□□□□ 0.2
CLN3-205ENST00000359984 A0A096LNT2 108 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 SLC31A2O15432 143 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 IGLV2-14P01704 120 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 RBP4P02753 201 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 SULT1A3P0DMM9 295 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 SULT1A4P0DMN0 295 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 PIGPP57054 158 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 ARF6P62330 175 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 CT45A1Q5HYN5 189 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 Q8N7P7 452 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 ZNF439Q8NDP4 499 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 OR52B4Q8NGK2 314 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 CT45A3Q8NHU0 189 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 MMP26Q9NRE1 261 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 SLC2A9Q9NRM0 540 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 SESN1Q9Y6P5 492 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 ITPR2Q14571 2701 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 IGHV2-70DA0A0C4DH43 119 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 A0A1W2PPE3 182 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 GPR31O00270 319 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 ITGB1BP1O14713 200 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 TAS2R31P59538 309 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 PPP1R1AQ13522 171 aa16.29■□□□□ 0.2
CLN3-205ENST00000359984 ABCA11PQ4W5N1 156 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms