RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TAS2R30P59541 319 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 ZFP82Q8N141 532 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 KDF1Q8NAX2 398 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-202ENST00000352886 OR1L1Q8NH94 360 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 SARAFQ96BY9 339 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 OTOGLQ3ZCN5 2332 aa18.33■□□□□ 0.53
SHMT1-202ENST00000352886 RBFOX3A6NFN3 312 aa18.33■□□□□ 0.53
SHMT1-202ENST00000352886 PAX6P26367 422 aa18.33■□□□□ 0.53
SHMT1-202ENST00000352886 OR3A1P47881 315 aa18.33■□□□□ 0.53
SHMT1-202ENST00000352886 C1orf162Q8NEQ5 155 aaPredicted RBP18.33■□□□□ 0.53
SHMT1-202ENST00000352886 CACNA1DQ01668 2161 aa18.33■□□□□ 0.53
SHMT1-202ENST00000352886 DSPP15924 2871 aaKnown RBP18.33■□□□□ 0.52
SHMT1-202ENST00000352886 TIMM8AO60220 97 aaPredicted RBP18.33■□□□□ 0.52
SHMT1-202ENST00000352886 CECR9P0C854 216 aa18.33■□□□□ 0.52
SHMT1-202ENST00000352886 CD200P41217 278 aa18.33■□□□□ 0.52
SHMT1-202ENST00000352886 PRAMEF6Q5VXH4 476 aa18.33■□□□□ 0.52
SHMT1-202ENST00000352886 SLC25A24Q6NUK1 477 aa18.33■□□□□ 0.52
SHMT1-202ENST00000352886 C2CD4CQ8TF44 421 aa18.33■□□□□ 0.52
SHMT1-202ENST00000352886 GALMQ96C23 342 aa18.33■□□□□ 0.52
SHMT1-202ENST00000352886 EP300Q09472 2414 aaPredicted RBP18.33■□□□□ 0.52
SHMT1-202ENST00000352886 BTBD17A6NE02 478 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 PRR33A8MZF0 331 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 C1QTNF9BB2RNN3 333 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 C12orf77C9JDV5 145 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 DAOP14920 347 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 AESQ08117 197 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 THNSL2Q86YJ6 484 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 CXXC4Q9H2H0 198 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 SMDT1Q9H4I9 107 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 PSENENQ9NZ42 101 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 KIAA1456Q9P272 454 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 HEATR1Q9H583 2144 aaKnown RBP18.32■□□□□ 0.52
SHMT1-202ENST00000352886 IFNA5P01569 189 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 TFF1P04155 84 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 FABP6P51161 128 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 UFSP2Q9NUQ7 469 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 RNF150Q9ULK6 438 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 TTC28Q96AY4 2481 aa18.32■□□□□ 0.52
SHMT1-202ENST00000352886 METTL15P1P0C7V9 234 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 HAGHQ16775 308 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 SOHLH1Q5JUK2 328 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 FAM53AQ6NSI3 398 aaPredicted RBP18.31■□□□□ 0.52
SHMT1-202ENST00000352886 ACP7Q6ZNF0 438 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 Q6ZR03 302 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 SFT2D1Q8WV19 159 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 ISOC2Q96AB3 205 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 MSL2Q9HCI7 577 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 SVILO95425 2214 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 GALR2O43603 387 aaPredicted RBP18.31■□□□□ 0.52
SHMT1-202ENST00000352886 IL2RGP31785 369 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 ACSF3Q4G176 576 aaPredicted RBP18.31■□□□□ 0.52
SHMT1-202ENST00000352886 WDR82Q6UXN9 313 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 ZNF645Q8N7E2 425 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 HIST1H2BAQ96A08 127 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 OR2D2Q9H210 308 aa18.31■□□□□ 0.52
SHMT1-202ENST00000352886 RNF212BA8MTL3 300 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 MEOX2P50222 304 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 TLE4Q04727 773 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 DEFB109BQ30KR1 87 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 SP5Q6BEB4 398 aaPredicted RBP18.3■□□□□ 0.52
SHMT1-202ENST00000352886 SLC35E4Q6ICL7 350 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 FGFRL1Q8N441 504 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 BIN3Q9NQY0 253 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 CHD3Q12873 2000 aaKnown RBP18.3■□□□□ 0.52
SHMT1-202ENST00000352886 FOLR2P14207 255 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 GABRA2P47869 451 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 OR52L2PQ8NGH6 319 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 COQ2Q96H96 371 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 EGLN1Q9GZT9 426 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 PLSCR4Q9NRQ2 329 aa18.3■□□□□ 0.52
SHMT1-202ENST00000352886 OOEPA6NGQ2 149 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 PTBP3O95758 552 aaKnown RBP18.29■□□□□ 0.52
SHMT1-202ENST00000352886 ARL16Q0P5N6 197 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 RHEBQ15382 184 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 ZNF610Q8N9Z0 462 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 RSG1Q9BU20 258 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 PUS1Q9Y606 427 aaKnown RBP eCLIP18.29■□□□□ 0.52
SHMT1-202ENST00000352886 USF3Q68DE3 2245 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 HBZP02008 142 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 KITLGP21583 273 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 DPPA3Q6W0C5 159 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 MRGPRDQ8TDS7 321 aa18.29■□□□□ 0.52
SHMT1-202ENST00000352886 OPN3Q9H1Y3 402 aaPredicted RBP18.29■□□□□ 0.52
SHMT1-202ENST00000352886 RAMP3O60896 148 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 ZNF718Q3SXZ3 478 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 OR2B11Q5JQS5 317 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 ZNF808Q8N4W9 903 aaPredicted RBP18.28■□□□□ 0.52
SHMT1-202ENST00000352886 TUBA4BQ9H853 241 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 DMXL1Q9Y485 3027 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 TNFSF13O75888 250 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 IGLV1-44P01699 117 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 GCH1P30793 250 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 HAPLN4Q86UW8 402 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 SCGB1C1Q8TD33 95 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 C5orf30Q96GV9 206 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 DKK4Q9UBT3 224 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 METRNQ9UJH8 293 aa18.28■□□□□ 0.52
SHMT1-202ENST00000352886 IGHV1-18A0A0C4DH31 117 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 A0A1W2PPH5 198 aa18.27■□□□□ 0.52
SHMT1-202ENST00000352886 CEBPGP53567 150 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms