RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 HOXA5P20719 270 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 S100PP25815 95 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 NDUFA6P56556 154 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 SERF2P84101 59 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 LRRC75BQ2VPJ9 315 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 SPANXN5Q5MJ07 72 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 FAM180AQ6UWF9 173 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 MBD3L1Q8WWY6 194 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 TOLLIPQ9H0E2 274 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 TNRC18O15417 2968 aaPredicted RBP15.83■□□□□ 0.12
CPSF3-201ENST00000238112 AHCTF1Q8WYP5 2266 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 RNF212BA8MTL3 300 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 SH2D1BO14796 132 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 CYB5BO43169 146 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 FGF8P55075 233 aaPredicted RBP15.83■□□□□ 0.12
CPSF3-201ENST00000238112 PNRC1Q12796 327 aaPredicted RBP15.83■□□□□ 0.12
CPSF3-201ENST00000238112 MRPL49Q13405 166 aaKnown RBP15.83■□□□□ 0.12
CPSF3-201ENST00000238112 FAM90A2PQ658T7 463 aa15.83■□□□□ 0.12
CPSF3-201ENST00000238112 DNAJC13O75165 2243 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 ERVK11-1P61568 191 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 ZNF726P1Q15940 193 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 HAPLN4Q86UW8 402 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 DRAM1Q8N682 238 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 RCC1LQ96I51 464 aaKnown RBP15.82■□□□□ 0.12
CPSF3-201ENST00000238112 DEFB127Q9H1M4 99 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 A0A1W2PNU3 283 aaPredicted RBP15.82■□□□□ 0.12
CPSF3-201ENST00000238112 J3QW42 95 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 CDIPTO14735 213 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 MPLP40238 635 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 CDX1P47902 265 aaPredicted RBP15.82■□□□□ 0.12
CPSF3-201ENST00000238112 TMEM41BQ5BJD5 291 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 OR2J1Q9GZK6 312 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 WDR61Q9GZS3 305 aaKnown RBP15.82■□□□□ 0.12
CPSF3-201ENST00000238112 MBNL3Q9NUK0 354 aaKnown RBP15.82■□□□□ 0.12
CPSF3-201ENST00000238112 DOK5Q9P104 306 aa15.82■□□□□ 0.12
CPSF3-201ENST00000238112 PGA5P0DJD9 388 aa15.81■□□□□ 0.12
CPSF3-201ENST00000238112 PPP1CBP62140 327 aa15.81■□□□□ 0.12
CPSF3-201ENST00000238112 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.81■□□□□ 0.12
CPSF3-201ENST00000238112 FGFRL1Q8N441 504 aa15.81■□□□□ 0.12
CPSF3-201ENST00000238112 PINX1Q96BK5 328 aaKnown RBP15.81■□□□□ 0.12
CPSF3-201ENST00000238112 ARRDC1-AS1Q9H2J1 176 aa15.81■□□□□ 0.12
CPSF3-201ENST00000238112 CDH20Q9HBT6 801 aa15.81■□□□□ 0.12
CPSF3-201ENST00000238112 WIPI2Q9Y4P8 454 aa15.81■□□□□ 0.12
CPSF3-201ENST00000238112 IGHV3-64DA0A0J9YX35 117 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 SMPD2O60906 423 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 IFNA1P01562 189 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 S100A2P29034 98 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 ELLP55199 621 aaPredicted RBP15.8■□□□□ 0.12
CPSF3-201ENST00000238112 ZNF146Q15072 292 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 ACSF3Q4G176 576 aaPredicted RBP15.8■□□□□ 0.12
CPSF3-201ENST00000238112 SSX7Q7RTT5 188 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 MDS2Q8NDY4 140 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 OR4C12Q96R67 309 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 P2RX4Q99571 388 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 KCNIP1Q9NZI2 227 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 ESPL1Q14674 2120 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 UBE2L5PA0A1B0GUS4 154 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 FAM90A26D6RGX4 464 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 CELA3BP08861 270 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 CD46P15529 392 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 SLC38A11Q08AI6 406 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 C1orf87Q8N0U7 546 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 PARD6GQ9BYG4 376 aaPredicted RBP15.8■□□□□ 0.12
CPSF3-201ENST00000238112 VAX2Q9UIW0 290 aa15.8■□□□□ 0.12
CPSF3-201ENST00000238112 MAP1LC3B2A6NCE7 125 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 CEBPZOSA8MTT3 80 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 CLDN1O95832 211 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 MRGPRGQ86SM5 289 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 MYPOPQ86VE0 399 aaPredicted RBP15.79■□□□□ 0.12
CPSF3-201ENST00000238112 CA5BP1Q8WTZ4 195 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 WDYHV1Q96HA8 205 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 GGACTQ9BVM4 153 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 MAP1LC3BQ9GZQ8 125 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 IL17BQ9UHF5 180 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 CYB5R3P00387 301 aaPredicted RBP15.79■□□□□ 0.12
CPSF3-201ENST00000238112 GRPP07492 148 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 IDH3GP51553 393 aaPredicted RBP15.79■□□□□ 0.12
CPSF3-201ENST00000238112 UBE2NP61088 152 aaKnown RBP15.79■□□□□ 0.12
CPSF3-201ENST00000238112 ERVS71-1P61550 626 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 OR8G2PQ6IF36 304 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 FIP1L1Q6UN15 594 aaKnown RBP15.79■□□□□ 0.12
CPSF3-201ENST00000238112 OR13D1Q8NGV5 346 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 TAF15Q92804 592 aaKnown RBP eCLIP15.79■□□□□ 0.12
CPSF3-201ENST00000238112 FER1L6-AS2Q96M78 137 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 ARHGAP21Q5T5U3 1957 aa15.79■□□□□ 0.12
CPSF3-201ENST00000238112 DOCK7Q96N67 2140 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 TRGV5A0A0B4J1U4 118 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 CLDN34H7C241 214 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 TRGC2P03986 189 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 ZNF645Q8N7E2 425 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 FAM210BQ96KR6 192 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 TMEM242Q9NWH2 141 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 GAR1Q9NY12 217 aaKnown RBP15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BKO60814 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HAND1O96004 215 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BJP06899 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 RAC2P15153 192 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BOP23527 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BBP33778 126 aa15.78■□□□□ 0.12
CPSF3-201ENST00000238112 HIST1H2BDP58876 126 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms