RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RAB35Q15286 201 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 ANAPC16Q96DE5 110 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 LINC01565O15544 149 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 SELEP16581 610 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 FUT6P51993 359 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 HNRNPKP61978 463 aaKnown RBP eCLIP11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 RSPO1Q2MKA7 263 aaPredicted RBP11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 ACTL10Q5JWF8 245 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 CMTM2Q8TAZ6 248 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 OR4C12Q96R67 309 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 UCN2Q96RP3 112 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 SAMD10Q9BYL1 202 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 ZNF816-ZNF321PA0A0X1KG74 233 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 IGLV3-1P01715 115 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 ZNF837Q96EG3 531 aaPredicted RBP11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 WDFY4Q6ZS81 3184 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 KIR2DS1A0A191URI9 304 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 GRIFINA4D1Z8 144 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 F2RP25116 425 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 KIR2DS4P43632 304 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 TNFSF10P50591 281 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 RPS16P62249 146 aaKnown RBP11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 KIR2DS1Q14954 304 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 ZNF525Q8N782 197 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 ADPRHL1Q8NDY3 354 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 OR10V1Q8NGI7 309 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 OR5D13Q8NGL4 314 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 GATAD1Q8WUU5 269 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 VAMP8Q9BV40 100 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 TUBG2Q9NRH3 451 aa11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 RYDENQ9NUL5 291 aaKnown RBP11.01□□□□□ -0.65
SFSWAP-209ENST00000540469 G3V3Y1 287 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 PAGE4O60829 102 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 PGLYRP1O75594 196 aaPredicted RBP11□□□□□ -0.65
SFSWAP-209ENST00000540469 TRAPPC6AO75865 159 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 B4GALT1P15291 398 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 SLC38A11Q08AI6 406 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 ZNF709Q8N972 641 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 PSMG3Q9BT73 122 aaPredicted RBP11□□□□□ -0.65
SFSWAP-209ENST00000540469 WNT5BQ9H1J7 359 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 RNF115Q9Y4L5 304 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 TMEM210A6NLX4 147 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 H0Y980 276 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 RBMXL2O75526 392 aaKnown RBP11□□□□□ -0.65
SFSWAP-209ENST00000540469 ARL16Q0P5N6 197 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 ABLIM2Q6H8Q1 611 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 ZNF573Q86YE8 665 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 OR1F12Q8NHA8 337 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 PLPPR1Q8TBJ4 325 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 VN1R17PQ8TDU5 208 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 PYGO2Q9BRQ0 406 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 ZDHHC11Q9H8X9 412 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 ERRFI1Q9UJM3 462 aaPredicted RBP11□□□□□ -0.65
SFSWAP-209ENST00000540469 PPP1R3CQ9UQK1 317 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 SIAH2O43255 324 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 EGR1P18146 543 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 SPINK2P20155 84 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 UBE2G2P60604 165 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 TMEM183BQ1AE95 376 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 DEFB126Q9BYW3 111 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 PLSCR2Q9NRY7 297 aa11□□□□□ -0.65
SFSWAP-209ENST00000540469 CLEC18AA5D8T8 446 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 TOX3O15405 576 aaPredicted RBP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 MYF5P13349 255 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 HNF1AP20823 631 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 IL3RAP26951 378 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 PLA2G5P39877 138 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 HIST3H3Q16695 136 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 Q6ZPA2 131 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 CLEC18CQ8NCF0 446 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 OR2M3Q8NG83 312 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 ZCCHC14Q8WYQ9 949 aaKnown RBP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 TAF15Q92804 592 aaKnown RBP eCLIP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 NEIL1Q96FI4 390 aaPredicted RBP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 ALKBH3Q96Q83 286 aaPredicted RBP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 MANBALQ9NQG1 85 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 PTPRSQ13332 1948 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 ZNF32P17041 273 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 DRD1P21728 446 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 GCH1P30793 250 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 SRP14P37108 136 aaKnown RBP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 MRPS21P82921 87 aaKnown RBP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 LRRC75BQ2VPJ9 315 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 PLXDC1Q8IUK5 500 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 OR10G9Q8NGN4 311 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 OR10G7Q8NGN6 311 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 WDR61Q9GZS3 305 aaKnown RBP10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 MSL2Q9HCI7 577 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 GPR27Q9NS67 375 aa10.99□□□□□ -0.65
SFSWAP-209ENST00000540469 TMEM250H0YL14 139 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 HS3ST1O14792 307 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 ZFAND5O76080 213 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 CRYAAP02489 173 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 PDLIM4P50479 330 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 TPPP2P59282 170 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 SP5Q6BEB4 398 aaPredicted RBP10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 ANKRD37Q7Z713 158 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 BAGE3Q86Y29 109 aa10.98□□□□□ -0.65
SFSWAP-209ENST00000540469 BAGE2Q86Y30 109 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms