RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	RBMXL1	Q96E39	390 aa	Known RBP	13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF251	Q9BRH9	671 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	IMPAD1	Q9NX62	359 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	C12orf77	C9JDV5	145 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	CDRT1	O95170	752 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	FAS	P25445	335 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	BLVRB	P30043	206 aa	Predicted RBP	13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	CRIP2	P52943	208 aa	Predicted RBP	13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	C5orf64	Q2M2E5	130 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	SLC25A30	Q5SVS4	291 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	C6orf183	Q5T699	404 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	OR10V1	Q8NGI7	309 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	FLYWCH2	Q96CP2	140 aa	Known RBP	13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	PDCD1LG2	Q9BQ51	273 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	ALG8	Q9BVK2	526 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	ELOVL1	Q9BW60	279 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	ANKRD60	Q9BZ19	345 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	STUB1	Q9UNE7	303 aa		13.6	□□□□□ -0.23
NUP50-218	ENST00000493456	FOXA2	Q9Y261	457 aa	Predicted RBP	13.6	□□□□□ -0.23
NUP50-218	ENST00000493456		A0A1W2PN81	502 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	SNTN	A6NMZ2	147 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF780A	O75290	641 aa	Predicted RBP	13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	IFNA6	P05013	189 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	CHRNA7	P36544	502 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	ECSCR	Q19T08	205 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	C19orf54	Q5BKX5	351 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	MEDAG	Q5VYS4	303 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	PYHIN1	Q6K0P9	492 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	LIN54	Q6MZP7	749 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	IL17D	Q8TAD2	202 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	S100A13	Q99584	98 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	JAM3	Q9BX67	310 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	SPACA1	Q9HBV2	294 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	KIAA1456	Q9P272	454 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	TRAPPC2L	Q9UL33	140 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	ING4	Q9UNL4	249 aa		13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	EXOG	Q9Y2C4	368 aa	Known RBP	13.59	□□□□□ -0.23
NUP50-218	ENST00000493456	NDUFA3	O95167	84 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	IGLV1-51	P01701	117 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	HSPB1	P04792	205 aa	Known RBP	13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	SERPINA2	P20848	420 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	CNTFR	P26992	372 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	SYT6	Q5T7P8	510 aa	Predicted RBP	13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	TRAT1	Q6PIZ9	186 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	PRR18	Q8N4B5	295 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	NPB	Q8NG41	125 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	KRTAP17-1	Q9BYP8	105 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	TAS2R4	Q9NYW5	299 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	FRAS1	Q86XX4	4008 aa		13.58	□□□□□ -0.24
NUP50-218	ENST00000493456	SOX15	O60248	233 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	HBZ	P02008	142 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	CD2	P06729	351 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	FCGR1A	P12314	374 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	ZNF93	P35789	620 aa	Predicted RBP	13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	SNRPG	P62308	76 aa	Known RBP	13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	NDP	Q00604	133 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	ZNF660	Q6AZW8	331 aa	Predicted RBP	13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	ANKRD13B	Q86YJ7	626 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	LGALS12	Q96DT0	336 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	RITA1	Q96K30	269 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	ABHD14A	Q9BUJ0	271 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	ISG20L2	Q9H9L3	353 aa	Known RBP	13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	TMEM138	Q9NPI0	162 aa		13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	RCC2	Q9P258	522 aa	Known RBP	13.57	□□□□□ -0.24
NUP50-218	ENST00000493456	MCRIP1	C9JLW8	97 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	GTF2F2	P13984	249 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	ARSB	P15848	533 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	PPP3R1	P63098	170 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	TMEM267	Q0VDI3	215 aa	Predicted RBP	13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	HAGH	Q16775	308 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	DDI2	Q5TDH0	399 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	AMIGO2	Q86SJ2	522 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	LHFPL3	Q86UP9	236 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	OR1L1	Q8NH94	360 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	NABP2	Q9BQ15	211 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	RSRP1	Q9BUV0	290 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	MRPL20	Q9BYC9	149 aa	Known RBP	13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	OR2S2	Q9NQN1	319 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	ETAA1	Q9NY74	926 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	OAZ3	Q9UMX2	235 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	FBXO7	Q9Y3I1	522 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	AP4S1	Q9Y587	144 aa		13.56	□□□□□ -0.24
NUP50-218	ENST00000493456	SOX2	P48431	317 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	GBX2	P52951	348 aa	Predicted RBP	13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	RAB40B	Q12829	278 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	MORN2	Q502X0	79 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	CD200R1L	Q6Q8B3	271 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	HAPLN4	Q86UW8	402 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	GAPT	Q8N292	157 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	OR4K15	Q8NH41	348 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	GPR148	Q8TDV2	347 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	CASTOR1	Q8WTX7	329 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	JPT1	Q9UK76	154 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	RNF150	Q9ULK6	438 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456	GMPPB	Q9Y5P6	360 aa		13.55	□□□□□ -0.24
NUP50-218	ENST00000493456		E9PI62	339 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	CA11	O75493	328 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	IGHV3-11	P01762	117 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	CD40LG	P29965	261 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms