RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SIGLEC12Q96PQ1 595 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 GPR35Q9HC97 309 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 PRSS50Q9UI38 385 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 LAMP3Q9UQV4 416 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 INTS1Q8N201 2190 aaKnown RBP7.4□□□□□ -1.23
USP40-203ENST00000427112 IGHV1-45A0A0A0MS14 117 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 CDIPTO14735 213 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 TRGC1P0CF51 173 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 DSCR4P56555 118 aaPredicted RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 RAB4BP61018 213 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 ZNF787Q6DD87 383 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 WDR74Q6RFH5 385 aaPredicted RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 ERASQ7Z444 233 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 VKORC1L1Q8N0U8 176 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 ARL6IP6Q8N6S5 226 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 CBLN4Q9NTU7 201 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 ASH1LQ9NR48 2969 aaKnown RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 CD300LBA8K4G0 201 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 TRDCB7Z8K6 153 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 IFNA5P01569 189 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 CFPP27918 469 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 G6PCP35575 357 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 GPX4P36969 197 aaPredicted RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 CD200P41217 278 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 FAM3BP58499 235 aaPredicted RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 LSM6P62312 80 aaKnown RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 CLN3Q13286 438 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 RAB35Q15286 201 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 FAM27BQ5VT28 67 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 NCR3LG1Q68D85 454 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 SPSB3Q6PJ21 355 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 MKXQ8IYA7 352 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 CCDC71LQ8N9Z2 235 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 OR4C5Q8NGB2 326 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 ZDHHC16Q969W1 377 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 SAMD10Q9BYL1 202 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 LY6G6EA0A0G2JKS1 128 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BKO60814 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 AGFG2O95081 481 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BJP06899 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 IFI6P09912 130 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BOP23527 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BBP33778 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 SUMO3P55854 103 aaPredicted RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BDP58876 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BCP62807 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST2H2BEQ16778 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 KHDC3LQ587J8 217 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.39□□□□□ -1.23
USP40-203ENST00000427112 C10orf91Q5T1B1 145 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BHQ93079 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BNQ99877 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 HIST1H2BMQ99879 126 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 U3KQA8 63 aa7.39□□□□□ -1.23
USP40-203ENST00000427112 A0A0U1RQV5 110 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 FOXI3A8MTJ6 420 aaPredicted RBP7.38□□□□□ -1.23
USP40-203ENST00000427112 LYZL6O75951 148 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 H3F3AP84243 136 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 ICAM4Q14773 271 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 HES3Q5TGS1 186 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 COMMD1Q8N668 190 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 ZNF610Q8N9Z0 462 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 MOB3AQ96BX8 217 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 C18orf12Q96KH6 178 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 TMEM222Q9H0R3 208 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 TUBD1Q9UJT1 453 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 TINAGQ9UJW2 476 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 MRPS17Q9Y2R5 130 aaKnown RBP7.38□□□□□ -1.23
USP40-203ENST00000427112 POMT1Q9Y6A1 747 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 C20orf202A1L168 122 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 K7N7A8 449 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 RAB29O14966 203 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 SIAH2O43255 324 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 RAMP3O60896 148 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 IGLV3-19P01714 112 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 SRP19P09132 144 aaKnown RBP7.38□□□□□ -1.23
USP40-203ENST00000427112 SELLP14151 372 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 APLNRP35414 380 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 RAC1P63000 192 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 CTAG1AP78358 180 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 ARG2P78540 354 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 AGBL5Q8NDL9 886 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 OR51G1Q8NGK1 321 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 OR10J5Q8NHC4 309 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 LEAP2Q969E1 77 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 CABLES2Q9BTV7 478 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 SCRT1Q9BWW7 348 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 PLEKHF2Q9H8W4 249 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 PSENENQ9NZ42 101 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 ZZEF1O43149 2961 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 CBR3O75828 277 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 HSPB1P04792 205 aaKnown RBP7.38□□□□□ -1.23
USP40-203ENST00000427112 SERPINA7P05543 415 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 SEC11BP0C7V7 166 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 AGAP20933 346 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 CCL1P22362 96 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 FUT6P51993 359 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 ELOBQ15370 118 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 HIST3H3Q16695 136 aa7.38□□□□□ -1.23
USP40-203ENST00000427112 LHFPL2Q6ZUX7 228 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms