RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 OPN1MWP04001 364 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 OPN1MW2P0DN77 364 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 OPN1MW3P0DN78 364 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 TMEM11P17152 192 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 CD83Q01151 205 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 EMX1Q04741 257 aaPredicted RBP14.6□□□□□ -0.07
CLN3-202ENST00000355477 P2RY14Q15391 338 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 Q3ZCU0 254 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 TCTEX1D4Q5JR98 221 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 TRAT1Q6PIZ9 186 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 C10orf99Q6UWK7 81 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 SLC25A48Q6ZT89 311 aaKnown RBP14.6□□□□□ -0.07
CLN3-202ENST00000355477 CENPVQ7Z7K6 275 aaPredicted RBP14.6□□□□□ -0.07
CLN3-202ENST00000355477 NDUFA11Q86Y39 141 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 OR6M1Q8NGM8 313 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 RBMXL1Q96E39 390 aaKnown RBP14.6□□□□□ -0.07
CLN3-202ENST00000355477 NEDD4LQ96PU5 975 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 TM2D1Q9BX74 207 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 GNG12Q9UBI6 72 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 BPNT1O95861 308 aa14.59□□□□□ -0.07
CLN3-202ENST00000355477 EBI3Q14213 229 aa14.59□□□□□ -0.07
CLN3-202ENST00000355477 GNMTQ14749 295 aa14.59□□□□□ -0.07
CLN3-202ENST00000355477 TBCEQ15813 527 aaPredicted RBP14.59□□□□□ -0.07
CLN3-202ENST00000355477 SSX1Q16384 188 aa14.59□□□□□ -0.07
CLN3-202ENST00000355477 C5orf56Q8N8D9 126 aa14.59□□□□□ -0.07
CLN3-202ENST00000355477 OR52L2PQ8NGH6 319 aa14.59□□□□□ -0.07
CLN3-202ENST00000355477 RTN4IP1Q8WWV3 396 aaPredicted RBP14.59□□□□□ -0.07
CLN3-202ENST00000355477 KCNIP1Q9NZI2 227 aa14.59□□□□□ -0.07
CLN3-202ENST00000355477 ZNF736B4DX44 427 aaPredicted RBP14.58□□□□□ -0.08
CLN3-202ENST00000355477 SLC17A2O00624 439 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 ARL6IP5O75915 188 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 PSMA1P25786 263 aaKnown RBP14.58□□□□□ -0.08
CLN3-202ENST00000355477 CALRP27797 417 aaKnown RBP14.58□□□□□ -0.08
CLN3-202ENST00000355477 TMEM30BQ3MIR4 351 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 MORN2Q502X0 79 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 Q6ZPA2 131 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 EAF1Q96JC9 268 aaPredicted RBP14.58□□□□□ -0.08
CLN3-202ENST00000355477 LPAR5Q9H1C0 372 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 PLGRKTQ9HBL7 147 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 RAB9BQ9NP90 201 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 ACOT13Q9NPJ3 140 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 OR2S2Q9NQN1 319 aa14.58□□□□□ -0.08
CLN3-202ENST00000355477 A0A1W2PRX2 142 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 SOCS1O15524 211 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 ARSBP15848 533 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 IL3RAP26951 378 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 BLVRBP30043 206 aaPredicted RBP14.57□□□□□ -0.08
CLN3-202ENST00000355477 ZNF137PP52743 207 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 PDLIM3Q53GG5 364 aaPredicted RBP14.57□□□□□ -0.08
CLN3-202ENST00000355477 Q8N6K4 173 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 R3HDM4Q96D70 268 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 BLOC1S6Q9UL45 172 aa14.57□□□□□ -0.08
CLN3-202ENST00000355477 G3V4G9 280 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 FGF16O43320 207 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 PPP1CCP36873 323 aaKnown RBP14.56□□□□□ -0.08
CLN3-202ENST00000355477 CLDN12P56749 244 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 HTD2P86397 168 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 ZNF367Q7RTV3 350 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 ZNF554Q86TJ5 538 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 IZUMO1Q8IYV9 350 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 FAM89BQ8N5H3 189 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 OR51D1Q8NGF3 324 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 PLEKHJ1Q9NW61 149 aa14.56□□□□□ -0.08
CLN3-202ENST00000355477 TCRBV4S1A1TA0A5B7 111 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 LINC01548A6NM66 108 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 NAPSAO96009 420 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 CD1BP29016 333 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 HMGN3Q15651 99 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 RAB11BQ15907 218 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 STEAP3Q658P3 488 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 ZNF880Q6PDB4 577 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 OR2W3Q7Z3T1 314 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 TGIF2LXQ8IUE1 241 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 ODF3L1Q8IXM7 274 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 OR4F17Q8NGA8 305 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 OR2T10Q8NGZ9 312 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 NOL4LQ96MY1 436 aaPredicted RBP14.55□□□□□ -0.08
CLN3-202ENST00000355477 OR4F4Q96R69 305 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 PLSCR3Q9NRY6 295 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 JPT1Q9UK76 154 aa14.55□□□□□ -0.08
CLN3-202ENST00000355477 SHISA3A0PJX4 238 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 NCBP2LA6PVI3 153 aaKnown RBP14.54□□□□□ -0.08
CLN3-202ENST00000355477 FOXI3A8MTJ6 420 aaPredicted RBP14.54□□□□□ -0.08
CLN3-202ENST00000355477 TMEM50BP56557 158 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 PLA2G7Q13093 441 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 C2orf76Q3KRA6 126 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 ZNF329Q86UD4 541 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 SVOPQ8N4V2 548 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 FAM3DQ96BQ1 224 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 GALMQ96C23 342 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 HDHD3Q9BSH5 251 aaPredicted RBP14.54□□□□□ -0.08
CLN3-202ENST00000355477 URM1Q9BTM9 101 aaKnown RBP14.54□□□□□ -0.08
CLN3-202ENST00000355477 NDUFB11Q9NX14 153 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 AK3Q9UIJ7 227 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 LINC00527Q9UJ94 153 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 V9GY05 133 aa14.54□□□□□ -0.08
CLN3-202ENST00000355477 LANCL1O43813 399 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 YPEL1O60688 119 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 MOSP00540 346 aa14.53□□□□□ -0.08
CLN3-202ENST00000355477 IGHG2P01859 326 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms