RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 RCL1Q9Y2P8 373 aaKnown RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 KLF13Q9Y2Y9 288 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SSSCA1O60232 199 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BKO60814 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BJP06899 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BOP23527 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BBP33778 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PPP1CCP36873 323 aaKnown RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PIGPP57054 158 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BDP58876 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BCP62807 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TGFBR3Q03167 851 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 EDDM3AQ14507 147 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST2H2BEQ16778 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PHYHD1Q5SRE7 291 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LEMD1Q68G75 181 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DMRTC2Q8IXT2 367 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ARHGEF39Q8N4T4 335 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR6X1Q8NH79 312 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RTN4IP1Q8WWV3 396 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CORO2AQ92828 525 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BHQ93079 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF488Q96MN9 340 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BNQ99877 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H2BMQ99879 126 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TTTY12Q9BZ98 90 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LYRM2Q9NU23 88 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MDFIC2A0A1B0GVS7 189 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HSBP1L1C9JCN9 74 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PGA3P0DJD8 388 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 S100A7P31151 101 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FOXG1P55316 489 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PNRC1Q12796 327 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FHL1Q13642 323 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SNAI3Q3KNW1 292 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DPPA3Q6W0C5 159 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CATSPERDQ86XM0 798 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 WDFY1Q8IWB7 410 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR1F12Q8NHA8 337 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF519Q8TB69 540 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SMIM8Q96KF7 97 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 AQP10Q96PS8 301 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RARRES2Q99969 163 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 KLK13Q9UKR3 277 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TRAPPC1Q9Y5R8 145 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPC1 479 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RNF212BA8MTL3 300 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BMP5P22003 454 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ECI1P42126 302 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PNLIPRP3Q17RR3 467 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TMEM268Q5VZI3 342 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 Q6ZN92 141 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RTN4RL2Q86UN3 420 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ADPRHL1Q8NDY3 354 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CIB3Q96Q77 187 aaPredicted RBP9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RNF122Q9H9V4 155 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 DNAJC4Q9NNZ3 241 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ST3GAL6Q9Y274 331 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 B4DEV8 164 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TRAPPC2LH3BP13 241 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZIC3O60481 467 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GSTP1P09211 210 aaKnown RBP9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 COX5BP10606 129 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NTF3P20783 257 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CA6P23280 308 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GABRA2P47869 451 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TAS2R30P59541 319 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PCBD1P61457 104 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 UNQ9370/PRO34162Q6UXP9 181 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MKXQ8IYA7 352 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 LRRC75AQ8NAA5 344 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 WFIKKN1Q96NZ8 548 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FAM24AA6NFZ4 105 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 DHRS7CA6NNS2 312 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 A8MXE2 369 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GAPDHP04406 335 aaKnown RBP9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MRPL49Q13405 166 aaKnown RBP9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 KLHDC1Q8N7A1 406 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR4F5Q8NH21 305 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RNF133Q8WVZ7 376 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 IMMP1LQ96LU5 166 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR4F4Q96R69 305 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TIMP4Q99727 224 aa9.33□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 A0A1B0GWJ7 208 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MARCH11A6NNE9 402 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CD300LBA8K4G0 201 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 DLEU1O43261 78 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR5H8P0DN80 308 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RTL6Q6ICC9 239 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GPX7Q96SL4 187 aaPredicted RBP9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF319Q9P2F9 582 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SIRPB1O00241 398 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR5AC1P0C628 307 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 VSIG8P0DPA2 414 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TMEM11P17152 192 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 Q0VFX4 171 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 Q8WTZ3 238 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GALNT14Q96FL9 552 aa9.32□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR10C1Q96KK4 312 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms