RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 IFNA17P01571 189 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 GIPP09681 153 aaPredicted RBP2.48□□□□□ -2.01
VPS13A-210ENST00000471439 OR8U9P0C7N5 309 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 MPC1LP0DKB6 136 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 GGT2P36268 569 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 SYKP43405 635 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 RPS10P46783 165 aaKnown RBP2.48□□□□□ -2.01
VPS13A-210ENST00000471439 TTPAP49638 278 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 CRADDP78560 199 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 ZNF616Q08AN1 781 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 PDIA2Q13087 525 aaKnown RBP2.48□□□□□ -2.01
VPS13A-210ENST00000471439 PSG5Q15238 335 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 TGFBIQ15582 683 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 ATP6AP1Q15904 470 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 THEM4Q5T1C6 240 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 FAM45BPQ6NSW5 357 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 SLC16A14Q7RTX9 510 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 OR2Z1Q8NG97 314 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 FAM45AQ8TCE6 357 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 IL22RA2Q969J5 263 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 ZHX1-C8orf76Q96EF9 292 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 SLC35E1Q96K37 410 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 OR2V2Q96R30 315 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 ZNF382Q96SR6 550 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 TBL1YQ9BQ87 522 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 SLC19A3Q9BZV2 496 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 REEP1Q9H902 201 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 LRRC40Q9H9A6 602 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 PLGRKTQ9HBL7 147 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 NMRAL1Q9HBL8 299 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 BFARQ9NZS9 450 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 ZNF225Q9UK10 706 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 TMCO1Q9UM00 188 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 ASB4Q9Y574 426 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 DSCAML1Q8TD84 2053 aa2.48□□□□□ -2.01
VPS13A-210ENST00000471439 IGHV3-64DA0A0J9YX35 117 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 OR5B21A6NL26 309 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 TMEM114B3SHH9 223 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 RPL36A-HNRNPH2H7BZ11 118 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 RAB36O95755 333 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 SERPINA3P01011 423 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 C1GALT1C1LP0DN25 315 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 FMO3P31513 532 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 OTX1P32242 354 aaPredicted RBP2.47□□□□□ -2.01
VPS13A-210ENST00000471439 PSPHP78330 225 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 H3F3AP84243 136 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 DDX39BQ13838 428 aaKnown RBP2.47□□□□□ -2.01
VPS13A-210ENST00000471439 GK3PQ14409 553 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 KIAA0087Q14695 138 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 STK38Q15208 465 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 DEFB135Q30KP9 77 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 C3orf33Q6P1S2 294 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 Q6ZR03 302 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 LRRC6Q86X45 466 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 COMMD1Q8N668 190 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 LINC00301Q8NCQ3 95 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 OR1L6Q8NGR2 347 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 RNF157Q96PX1 679 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 OR2M2Q96R28 347 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 ZBTB18Q99592 522 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 MS4A8Q9BY19 250 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 BCL2L14Q9BZR8 327 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 OR11A1Q9GZK7 315 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 GIN1Q9NXP7 522 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 EXTL2Q9UBQ6 330 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 TRAPPC4Q9Y296 219 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 TP53TG1Q9Y2A0 90 aa2.47□□□□□ -2.01
VPS13A-210ENST00000471439 NBDYA0A0U1RRE5 68 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 A0A1W2PPE3 182 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 I3L521 148 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 IGKV1D-16P01601 117 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 SERPINE1P05121 402 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 SERPINA5P05154 406 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 PGA5P0DJD9 388 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 PSG2P11465 335 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 NR2C1P13056 603 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 MGMTP16455 207 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 IL12AP29459 219 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 GLP1RP43220 463 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 TAS2R39P59534 338 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 SLC35B1P78383 322 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 ZNF117Q03924 483 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 SCRN3Q0VDG4 424 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 TFDP2Q14188 446 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 CEACAM16Q2WEN9 425 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 NUDCD3Q8IVD9 361 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 TPRX1Q8N7U7 411 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 SLC30A7Q8NEW0 376 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 OR9K2Q8NGE7 335 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 KLF14Q8TD94 323 aaPredicted RBP2.46□□□□□ -2.02
VPS13A-210ENST00000471439 GPR119Q8TDV5 335 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 ZNF799Q96GE5 643 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 RNF185Q96GF1 192 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 MS4A4EQ96PG1 132 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 FAIM2Q9BWQ8 316 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 GBA3Q9H227 469 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 ANKRD19PQ9H560 264 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 METTL8Q9H825 291 aaKnown RBP2.46□□□□□ -2.02
VPS13A-210ENST00000471439 SIAEQ9HAT2 523 aa2.46□□□□□ -2.02
VPS13A-210ENST00000471439 PARVBQ9HBI1 364 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms