RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PKIAP61925 76 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 FOXF1Q12946 379 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ENDOGQ14249 297 aaKnown RBP4.77□□□□□ -1.65
LIMA1-203ENST00000547825 HABP2Q14520 560 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-203ENST00000547825 LY6G6FQ5SQ64 297 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 GFI1BQ5VTD9 330 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF100Q8IYN0 542 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 NMES1Q9C002 83 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 SLC17A5Q9NRA2 495 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 DNAJB11Q9UBS4 358 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 PILRBQ9UKJ0 227 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 MCTS1Q9ULC4 181 aaKnown RBP4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZDHHC8Q9ULC8 765 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 R4GN57 208 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 CACNA1AO00555 2505 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZZEF1O43149 2961 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CSMD1Q96PZ7 3565 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 AQP7P3A6NL99 342 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 PRAMEF26H0Y7S4 382 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CHST1O43916 411 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CD74P04233 296 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 NDUFB7P17568 137 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 PEBP1P30086 187 aaKnown RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 P2RY4P51582 365 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 MYBPHQ13203 477 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 IQCJQ1A5X6 159 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 IZUMO4Q1ZYL8 232 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 DPPA3Q6W0C5 159 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 AAED1Q7RTV5 226 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 OR4A4PQ8NGN8 299 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 BORCS7Q96B45 105 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 PLEKHF2Q9H8W4 249 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 HEYLQ9NQ87 328 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 PSENENQ9NZ42 101 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TRAPPC1Q9Y5R8 145 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 NPTNQ9Y639 398 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TTC28Q96AY4 2481 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 PKDREJQ9NTG1 2253 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 NKX2-6A6NCS4 301 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CDX4O14627 284 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 MBPP02686 304 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TTRP02766 147 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CT45A8P0DMV1 189 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CT45A9P0DMV2 189 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 B4GALT1P15291 398 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 BTF3P20290 206 aaKnown RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 IL11P20809 199 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CALCRP30988 508 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 SNCAP37840 140 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 SULT1A2P50226 295 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 INSM1Q01101 510 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CT45A2Q5DJT8 189 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 FAM78BQ5VT40 261 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 RTL6Q6ICC9 239 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 SIGLECL1Q8N7X8 197 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 DMBX1Q8NFW5 382 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 RPS4Y2Q8TD47 263 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 DTD1Q8TEA8 209 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TMEM68Q96MH6 324 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 ALKBH3Q96Q83 286 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TMEM204Q9BSN7 226 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 VAMP8Q9BV40 100 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 SLC26A1Q9H2B4 701 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 C5orf66Q9H5L9 145 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 PARP11Q9NR21 331 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TREM2Q9NZC2 230 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 CLCF1Q9UBD9 225 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 LOC101059948A0A1B0GTJ6 334 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 KIAA1324LA8MWY0 1029 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 H0YIZ8 118 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 RAMP1O60894 148 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 NRASP01111 189 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 IGHV4-34P06331 123 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TRGC1P0CF51 173 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 FABP6P51161 128 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 SHBQ15464 509 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 TMEM241Q24JQ0 296 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 PHYHD1Q5SRE7 291 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 LINC01590Q5TEZ4 76 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 UNQ9370/PRO34162Q6UXP9 181 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 YRDCQ86U90 279 aaKnown RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 OR8B12Q8NGG6 310 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 OR1K1Q8NGR3 316 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 VSTM2LQ96N03 204 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 KLHDC3Q9BQ90 382 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF665Q9H7R5 613 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 RARRES3Q9UL19 164 aa4.76□□□□□ -1.65
LIMA1-203ENST00000547825 MRPS17Q9Y2R5 130 aaKnown RBP4.76□□□□□ -1.65
LIMA1-203ENST00000547825 BOD1L1Q8NFC6 3051 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 CLEC18AA5D8T8 446 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 MAP1LC3B2A6NCE7 125 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 ARGFXA6NJG6 315 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 SERPINE3A8MV23 424 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 HSBP1L1C9JCN9 74 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 CYR61O00622 381 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 EIF4E2O60573 245 aaKnown RBP4.75□□□□□ -1.65
LIMA1-203ENST00000547825 ZFAND5O76080 213 aa4.75□□□□□ -1.65
LIMA1-203ENST00000547825 PTBP3O95758 552 aaKnown RBP4.75□□□□□ -1.65
LIMA1-203ENST00000547825 IGHV3-13P01766 116 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms